Locus 8715

Sequence ID 3L_DroMel_CAF1
Location 22,640,285 – 22,640,386
Length 101
Max. P 0.997947
window14280

overview

Window 0

Location 22,640,285 – 22,640,386
Length 101
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 76.61
Mean single sequence MFE -42.10
Consensus MFE -18.38
Energy contribution -20.63
Covariance contribution 2.25
Combinations/Pair 1.28
Mean z-score -4.20
Structure conservation index 0.44
SVM decision value 2.97
SVM RNA-class probability 0.997947
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22640285 101 - 23771897
CGC--GAUUUCAUUAUGCUGCAGUCAUUGGGCGCAGCUUCUGGUGUCGC-GAAAGUUGCAGCUACGUAAUUAGCAAUUUAGCGAU--GCAGU-GUAAUGGAAU-----CCAG
.(.--(((((((((((((((((.((....((((((((((.((......)-).))))))).))).........((......)))))--)))))-))))))))))-----)).. ( -37.90)
>DroPse_CAF1 6340 104 - 1
CGUAAGAUUUCAUUAGCC---AGGCUCUC-GAGGGGCCUCC----UCGCUGGAAGUUUGCGCAGCGUAAUUAGCAAUGCAGGCGUCUGCAGGAGGAGCCGCACCAGGUCGUG
..................---.(((.((.-(.(.(((.(((----((.(((.(.(((((((..((.......))..)))))))...).))))))))))).).).)))))... ( -33.70)
>DroSec_CAF1 9085 100 - 1
CGC--GAUUUCAUUAUGCUGCAGUCAU-GGGCGCAGCUUCUGCUGUCGC-GGAAGUUGCAGCCACGUAAUUAGCAAUUUAGCGAU--GCAGU-GUAAUGGAAU-----CCAG
.(.--(((((((((((((((((.((((-(((((((((((((((....))-))))))))).))).))).....((......)))))--)))))-))))))))))-----)).. ( -50.70)
>DroSim_CAF1 7472 100 - 1
CGC--GAUUUCAUUAUGCUGCAGUCAU-GGGCGCAGCUUCUGCUGUCGC-GGAAGUUGCAGCCACGUAAUUAGCAAUUUAGCGAU--GCAGU-GCAAUGGAAU-----CCAG
.(.--(((((((((..((((((.((((-(((((((((((((((....))-))))))))).))).))).....((......)))))--)))))-..))))))))-----)).. ( -47.10)
>DroEre_CAF1 5721 101 - 1
CGC--GAUUUCAUUAUGCUGCAGUCAGUUGGCGCAGCUUCUGCUGUCGC-GGAAGUUGCCGCCACGUAAUUAGCAAUUUAGCAGU--GCAGU-GUAAUGGAAU-----CCAG
.(.--(((((((((((((((((....((.((((((((((((((....))-)))))))).)))))).......((......))..)--)))))-))))))))))-----)).. ( -49.10)
>DroYak_CAF1 17828 91 - 1
CGC--GAUUUCAUUAUGCUUCAGUUAUUUGGCGCAGCUUCUGUUGUCGC-GGAAUCUGCCGCCACGUAAUUAGCAUUUUAG-------------UAAUGGAAU-----CCAG
.(.--((((((((((((((..((((((.((((((((.((((((....))-)))).))).))))).))))))))))......-------------)))))))))-----)).. ( -34.10)
>consensus
CGC__GAUUUCAUUAUGCUGCAGUCAUUGGGCGCAGCUUCUGCUGUCGC_GGAAGUUGCAGCCACGUAAUUAGCAAUUUAGCGAU__GCAGU_GUAAUGGAAU_____CCAG
......((((((((..(((((........((((((((((((((....)).))))))))).)))..((.....)).............)))))...))))))))......... (-18.38 = -20.63 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:58 2006