Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,635,320 – 22,635,430 |
Length | 110 |
Max. P | 0.523136 |
Location | 22,635,320 – 22,635,430 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.96 |
Mean single sequence MFE | -38.38 |
Consensus MFE | -25.29 |
Energy contribution | -26.17 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.16 |
Mean z-score | -2.31 |
Structure conservation index | 0.66 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22635320 110 - 23771897 -----CGGGGCUUGGUGAAUUUAAAUAUUCCUACGAAUCGAUUGGCCC---CCAACCAAGCAGGGCCGAAUAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA -----.(.(((((((.((((......)))))))((.(((..(((((((---...........)))))))...))).))((.((((((.(((.....))))))))).)))))).).... ( -35.20) >DroSec_CAF1 3891 110 - 1 -----CGGGUCUCGGUGAAUUUAAAUGUUUCUCCGAAUCGAUUGGCCC---CCAACCAAGCAGGGCCGAACAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA -----((((((((((.(((.........))).))))...(.(((((((---...........))))))).).))))))((.((((((.(((.....))))))))).)).......... ( -41.40) >DroSim_CAF1 2240 110 - 1 -----CGGGUCUCGGUGAAUUUAAAUGUUCCUCCGAAUCGAUUGGCCC---CCAACCAAGCAGGGCCGAACAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA -----((((((((((.((((......))))..))))...(.(((((((---...........))))))).).))))))((.((((((.(((.....))))))))).)).......... ( -42.00) >DroEre_CAF1 571 118 - 1 GGGCUCGGGGUUCGGUGAAUUUAAAUGUUCCUCCAUAUCGAUUCGCCACAACCAACCAACCAGGCCCGAACAGAUUCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUGGCUGUAUUA ((((..((((((.((((((((.(.(((......))).).))))))))..))))......))..))))..((((...(.((.((((((.(((.....))))))))).)).))))).... ( -41.90) >DroYak_CAF1 13302 108 - 1 -----CGGGAUUCGGUGAAUUUAAAUGUUCCUCCAAAUCGAUUCGCC-----CAACCACCCAGGGCCGAACAGAUCCGACCUGAGCCAUUCCACCAGGAGGCUGAAGUGGCUGUAUUA -----((((..((((.((((......))))......(((..((((((-----(.........))).))))..)))))))))))(((((((.((((....)).)).)))))))...... ( -31.40) >consensus _____CGGGGCUCGGUGAAUUUAAAUGUUCCUCCGAAUCGAUUGGCCC___CCAACCAAGCAGGGCCGAACAGAUCCGACCUGAGCCAUCCCACCAGGAGGCUCAAGUAGCUGUAUUA .....(((...((((.((((......))))..)))).))).((((((................))))))((((.....((.((((((.(((.....))))))))).))..)))).... (-25.29 = -26.17 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:52 2006