Locus 8711

Sequence ID 3L_DroMel_CAF1
Location 22,625,668 – 22,625,758
Length 90
Max. P 0.556568
window14272

overview

Window 2

Location 22,625,668 – 22,625,758
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 81.02
Mean single sequence MFE -25.67
Consensus MFE -20.01
Energy contribution -20.48
Covariance contribution 0.48
Combinations/Pair 1.19
Mean z-score -1.17
Structure conservation index 0.78
SVM decision value 0.05
SVM RNA-class probability 0.556568
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22625668 90 + 23771897
UGAGC----UUGGCUGCAAGAAAAGCAUUUUCGAGCGCUCAAGCUCUGGUAUAAUAAACUCCAGGGAUAGGGCCAAUUGUCUGCCGCCUUGGAA
.((((----(((((.((..((((.....))))..)))).))))))).............(((((((...((((.....))))....))))))). ( -32.00)
>DroPse_CAF1 5299 94 + 1
CACUCUCUUUUGGCUACAAGGAAAGCAUUUUUAAGCGCUCAAUCCCGGGCACAAUAAACUCCUGGGAGAGGGCCAAUUGUCUGCCAGCCCAGGA
...(((...(((((.((((.....((........))((((..(((((((...........)))))))..))))...))))..)))))...))). ( -27.30)
>DroSec_CAF1 5355 90 + 1
UGAGC----UGGGCUGCGAGAAAAGCAUUUCCGAGCGCUCAAUCUCUGGCAUAAUAAACUCCAGGGAUAGGGCCAAUUGUCUGCCGCCUUGGAA
....(----.((((.((.(((...((........))((((.((((((((...........)))))))).))))......))))).)))).)... ( -27.60)
>DroEre_CAF1 6281 90 + 1
UGAGU----UUGGCUACAAGAAAAGCAUUUUUGAGCGCUCAAUCUCUUACAUAAUAAACUCCAGGGAUAGGGCCAAUUGUCUGCCGCCUUGAUA
(((((----...(((.((((((.....))))))))))))))....................(((((...((((.....))))....)))))... ( -19.90)
>DroYak_CAF1 15539 89 + 1
UGGGC----UUGUCUACAAGA-AAGCAUUUUUUAGCGCACAAUCUCUGGCAUAAUAAACUCCAGGGAUAGGGCCAAAUUUCUGCCGCCUUGGAA
.((((----.((....))(((-((((........))((.(.((((((((...........)))))))).).))....)))))...))))..... ( -19.90)
>DroPer_CAF1 4293 94 + 1
CACUCUCUUUUGGCUACAAGGAAAGCAUUUUUAAGCGCUCAAUCCCGGGCACAAUAAACUCCUGGGAGAGGGCCAAUUGUCUGCCAGCCCAGGA
...(((...(((((.((((.....((........))((((..(((((((...........)))))))..))))...))))..)))))...))). ( -27.30)
>consensus
UGAGC____UUGGCUACAAGAAAAGCAUUUUUGAGCGCUCAAUCUCUGGCAUAAUAAACUCCAGGGAUAGGGCCAAUUGUCUGCCGCCUUGGAA
...........(((.((((.....((........))((((.((((((((...........)))))))).))))...))))..)))......... (-20.01 = -20.48 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:51 2006