Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,624,415 – 22,624,508 |
Length | 93 |
Max. P | 0.910228 |
Location | 22,624,415 – 22,624,508 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 75.54 |
Mean single sequence MFE | -17.83 |
Consensus MFE | -1.72 |
Energy contribution | -1.72 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.10 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22624415 93 - 23771897 UCUGUUCCUGUAGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUUGUGACCAAUUGAAAACUCCACCAAACGGCAACG-------AAGCUAAAAAAA ..........((((......(((((.(((((((.(.......).)))))))....))))).............((....))-------..))))...... ( -16.50) >DroPse_CAF1 4024 84 - 1 UGUAUCCUUGUAGCUACAACUUAAUGCGCAACAACGAAUGGC-AUGCAAUGACCAAAAGAAAAC-CAACAAAAAAAUAACA-------------GAAAA- (((.((.((((.((.............)).)))).)).((((-((...))).))).........-..)))...........-------------.....- ( -7.12) >DroSec_CAF1 4071 99 - 1 UCUGUUCCUGUUGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUGGUGACCAAGUGAAAACUCCACCAAACGGCAACAGAGAGCAAAGCCAAAAAA- ..((((((((((((............((((.(.....).))))...(((((....(((....))).)))))....))))))).)))))...........- ( -29.20) >DroSim_CAF1 4127 99 - 1 UCUGUUCCUGUUGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUGGUGACCAAGUGAAAACUCCACCAAACGGCAACAGAGAGCAAAGCCAAAAAA- ..((((((((((((............((((.(.....).))))...(((((....(((....))).)))))....))))))).)))))...........- ( -29.20) >DroPer_CAF1 3037 84 - 1 UGUAUCCUUGUAGCUACAACUUAAUGCGCAACAACGAAUGGC-AUGCAAUGACCAAAAGAAAAC-CAACAAAAAAAUAACA-------------GAAAA- (((.((.((((.((.............)).)))).)).((((-((...))).))).........-..)))...........-------------.....- ( -7.12) >consensus UCUGUUCCUGUAGCAACAACUUAAUGCGCAACAACAAGCUGCGAUGUAGUGACCAAAUGAAAACUCCACCAAACGGCAACA_______AAGC_AAAAAA_ ........(((.((.............)).)))................................................................... ( -1.72 = -1.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:50 2006