Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,618,819 – 22,618,925 |
Length | 106 |
Max. P | 0.999953 |
Location | 22,618,819 – 22,618,925 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 71.83 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -14.93 |
Energy contribution | -14.50 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.29 |
Mean z-score | -2.61 |
Structure conservation index | 0.66 |
SVM decision value | 4.82 |
SVM RNA-class probability | 0.999953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22618819 106 - 23771897 GGCAAGCACCGUUUGCCGUCGAAAUCUUCCAUUUCCCACUUUCCAUUCCAUUUCCACCUCUUAC---CCCACUUCCCACCUGGCGACCUUCCGCCAACGGAUGACUGCA (((((((...)))))))((((((((.....))))).............................---......(((....(((((......)))))..))).))).... ( -22.50) >DroSec_CAF1 5972 104 - 1 ----AGCUCCCUUCGCCGUCGGAAUCUUCCAUUUCCCACUUUCCACCU-CUGACCACCUCUCACCGCCCCACUUCCCACCUGGCGACCUUCCGCCAGCGGAUGGCUGCA ----..........((((((((((........))))............-.............................(((((((......)))))).))))))).... ( -24.40) >DroYak_CAF1 7072 88 - 1 GGCGAGUUCCUUUCGCCGUCGAAAUCUUUCAUAUUCCACUUUCCAG---------------------CCCACUUCCCAUUUGGUGUCCUUCCGUCAACGGAUGACUGCA ((((((.....))))))((((.......................((---------------------..((((........))))..))((((....)))))))).... ( -21.10) >consensus GGC_AGCUCCCUUCGCCGUCGAAAUCUUCCAUUUCCCACUUUCCAC____U__CCACCUCU_AC___CCCACUUCCCACCUGGCGACCUUCCGCCAACGGAUGACUGCA ..............((.((((((....)))...........................................(((...((((((......)))))).))).))).)). (-14.93 = -14.50 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:49 2006