Locus 8708

Sequence ID 3L_DroMel_CAF1
Location 22,616,467 – 22,616,558
Length 91
Max. P 0.966577
window14269

overview

Window 9

Location 22,616,467 – 22,616,558
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 86.56
Mean single sequence MFE -35.34
Consensus MFE -24.78
Energy contribution -25.70
Covariance contribution 0.92
Combinations/Pair 1.16
Mean z-score -3.02
Structure conservation index 0.70
SVM decision value 1.60
SVM RNA-class probability 0.966577
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22616467 91 + 23771897
GGCCAUUAGACCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAACGGAUUUGAAUGAACAGGGCGAAGGGGCGAACCCCCCGCUAGCUCCAUC
.(((....(((((.....))))).((((((((..((((......))))..)))).)))))))...(((((.............)))))... ( -32.02)
>DroSec_CAF1 3617 91 + 1
GGCCAUUAGGCCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAGUGGAUUUGAAUGAAUAGGACGAUGGGGCGAGCACCCCGCUAGCCCCAUC
((((....))))........(((....(((((..((((......))))..)))))....)))((((((((.(((.....))).)))))))) ( -43.00)
>DroSim_CAF1 3596 91 + 1
GGCCAUUAGGCCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAGCGGAUUUGAAUGAAUAGGACGAUGGGGCGAGCACCCCGCUAGCCCCAUC
((((....))))........(((....(((((..((((......))))..)))))....)))((((((((.(((.....))).)))))))) ( -43.00)
>DroEre_CAF1 4017 88 + 1
GGCCAUUAGGCCAAUUGCUGGUCAUUGUCAUUUGGAUUGCAGCAAAUUCGAAUGAAUUGCGCGAUAAAGAG-G--CCCCGCCAGCCCCAUC
((((....))))....((((((....(((.(((..(((((.((((.(((....))))))))))))..))))-)--)...))))))...... ( -30.20)
>DroYak_CAF1 4780 89 + 1
GGCCAUUAGGCCAAUUGCUGGUCAUUGUCAAUUGGAUCGCAGCGAAUUCGAAUGAACUGGGCGAUAAAGAGAG--CCCCACCAGCCCCAUC
((((....))))....((((((.....(((.((((((((...)).)))))).)))...((((..........)--))).))))))...... ( -28.50)
>consensus
GGCCAUUAGGCCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAGCGGAUUUGAAUGAAUAGGGCGAUGGGGCGAGC_CCCCGCUAGCCCCAUC
((((....))))....((((((.....(((((((((((......)))))))))))..........((((......))))))))))...... (-24.78 = -25.70 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:48 2006