Locus 8707

Sequence ID 3L_DroMel_CAF1
Location 22,614,053 – 22,614,146
Length 93
Max. P 0.697350
window14268

overview

Window 8

Location 22,614,053 – 22,614,146
Length 93
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 92.69
Mean single sequence MFE -25.98
Consensus MFE -23.90
Energy contribution -23.78
Covariance contribution -0.12
Combinations/Pair 1.14
Mean z-score -1.19
Structure conservation index 0.92
SVM decision value 0.34
SVM RNA-class probability 0.697350
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22614053 93 + 23771897
CGUGUCCUGGAAAAUAUAUCAGGAUUGCCGUCACUGCACAGAUAGUCGGCAAACGAUGGCUAGGAUC-------GACUCCACUGGGUAAAAAGUACACAA
.(((((((((........))))))(((((((....)).(((.((((((........))))))(((..-------...))).))))))))......))).. ( -23.00)
>DroSec_CAF1 1002 93 + 1
CGUGUCCUGGAAAAUAUAUCAGGAUUGCCGUCACUGCACAGACAGUCGGCAAACGAUGGCUAGGAUC-------GACCCGACUGGGUAAAAAGUACACAA
.(((((((((......((((.(..((((((..((((......)))))))))).))))).))))))..-------.((((....))))........))).. ( -27.90)
>DroSim_CAF1 991 93 + 1
CGUGUCCUGGAAAAUAUAUCAGGAUUGCCGUCACUGCACAGACAGUCGGCAAACGAUGGCUAGGAUC-------GACCCGACUGGGUAAAAAGUACACAA
.(((((((((......((((.(..((((((..((((......)))))))))).))))).))))))..-------.((((....))))........))).. ( -27.90)
>DroEre_CAF1 1039 99 + 1
CGUGUCCUGGA-AAUAUAUCAGGAUAGCCGUCACUGCGCAGACAGUCGGCAAACCAUGGCUAGGAUCGACCAUCGACUCGACUGGGUAAAAAGUACACAA
..((((((((.-......))))))))((((..((((......))))))))..(((.(((...(..(((.....)))..)..))))))............. ( -25.10)
>DroYak_CAF1 993 93 + 1
CGUGUCCUGGAAAAUAUAUCAGGAUAGCCGUCACUGCGCAGACAGUCGGCAAACGAUGGCCGGGAUC-------GACUCGACUGGGUAAAAAGUACACAA
..((((((((........))))))))((((..((((......))))))))..((....(((.((.((-------(...))))).))).....))...... ( -26.00)
>consensus
CGUGUCCUGGAAAAUAUAUCAGGAUUGCCGUCACUGCACAGACAGUCGGCAAACGAUGGCUAGGAUC_______GACUCGACUGGGUAAAAAGUACACAA
.(((((((((......((((.(..((((((..((((......)))))))))).))))).))))))..........((((....))))........))).. (-23.90 = -23.78 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:47 2006