Locus 8706

Sequence ID 3L_DroMel_CAF1
Location 22,606,592 – 22,606,687
Length 95
Max. P 0.561761
window14267

overview

Window 7

Location 22,606,592 – 22,606,687
Length 95
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 80.59
Mean single sequence MFE -25.58
Consensus MFE -16.84
Energy contribution -16.70
Covariance contribution -0.14
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.66
SVM decision value 0.06
SVM RNA-class probability 0.561761
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22606592 95 - 23771897
-------CUCCCAUUGACAGUUAUUAUGUUACGGUAUUAUCUCGUUAUUUAUGCAGCAGAUGACAAAUGCAAUUUGUUGUUUGCACACCGAA-CCUGG----------GCCA---G
-------..((((.(((((.......)))))((((........((.......)).(((((..((((((...))))))..)))))..))))..-..)))----------)...---. ( -24.40)
>DroVir_CAF1 80418 112 - 1
---CACCCCCCCAUUGACAGUUAUUAUGUUACGGUAUUAUCUCGUUAUUUAUGCAGCAGAUGACAAAUGCAAUUUGUUGUUUGCACACGGGA-GCUGCUGCACUGCAAACUGGCAA
---..........(((.(((((....(((..(((((...((((((.......)).(((((..((((((...))))))..)))))....))))-..)))))....)))))))).))) ( -26.70)
>DroGri_CAF1 69281 102 - 1
---CAGCCACCCACUGACAGUUAUUAUGUUACGGUAUUAUCUCGUUAUUUAUGCAGCAGAUGACAAAUGCAAUUUGUUGUUUGCACACGGGA-GCUGC----------ACUGGCAA
---..((((.....(((((.......)))))..(((...((((((.......)).(((((..((((((...))))))..)))))....))))-..)))----------..)))).. ( -26.30)
>DroMoj_CAF1 98780 110 - 1
---C--CACCCCCUUGACAGUUAUUAUGUUACGGUAUUAUCUCGUUAUUUAUGCAGCAGAUGACAAAUGCAAUUUGUUGUUUGCACACGGGA-GCUGCAGCACUGUUAACUGGCAA
---.--........((.((((((.((((((.((((....((((((.......)).(((((..((((((...))))))..)))))....))))-)))).)))).)).)))))).)). ( -28.50)
>DroAna_CAF1 62612 91 - 1
-----------CACUGACAGUUAUUAUGUUACGGUAUUAUCUCGUUAUUUAUGCAGCAGAUGACAAAUGCAAUUUGUUGUUUGCUCACCAAA-CCUGG----------ACCG---U
-----------....((((.......))))(((((................((.((((((..((((((...))))))..))))))))(((..-..)))----------))))---) ( -22.90)
>DroPer_CAF1 82453 101 - 1
CACGCCCCACCCAUUGACAGUUAUUAUGUUACGGUAUUAUCUCGUUAUUUAUGCAGCAGAUGACAAAUGCAAUUUGUUGUUUGCACACCCAGGGCCGA----------GCC-----
...((((.(((...(((((.......))))).)))....................(((((..((((((...))))))..))))).......))))...----------...----- ( -24.70)
>consensus
___C__CCACCCAUUGACAGUUAUUAUGUUACGGUAUUAUCUCGUUAUUUAUGCAGCAGAUGACAAAUGCAAUUUGUUGUUUGCACACCGAA_GCUGC__________ACCG___A
..............(((((.......)))))((((........((.......)).(((((..((((((...))))))..)))))........................)))).... (-16.84 = -16.70 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:46 2006