Locus 8704

Sequence ID 3L_DroMel_CAF1
Location 22,597,969 – 22,598,067
Length 98
Max. P 0.845004
window14263

overview

Window 3

Location 22,597,969 – 22,598,067
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 88.11
Mean single sequence MFE -29.37
Consensus MFE -24.05
Energy contribution -24.87
Covariance contribution 0.82
Combinations/Pair 1.04
Mean z-score -2.48
Structure conservation index 0.82
SVM decision value 0.77
SVM RNA-class probability 0.845004
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22597969 98 + 23771897
CUAAUCAUCAUUAACAAUUACACAACGUAGCUGACUCUGGUGAUUAGUCGGACCAUGCGGGUCCGAGGGCC-GAGUCCCACCC--CCAUCAAGUCUAAUCA
((((((((((....((.((((.....)))).))....))))))))))(((((((.....)))))))(((..-....)))....--................ ( -28.80)
>DroSec_CAF1 54663 98 + 1
CUAAUCAUCAUUAACAAUUACACAACGUAGCUGACUCUGGUGAUUAGUCGGACCAUGCGGGUCCGAGGGCC-GAGUCCCACCC--CCAUCAAGUCUAAUCA
((((((((((....((.((((.....)))).))....))))))))))(((((((.....)))))))(((..-....)))....--................ ( -28.80)
>DroSim_CAF1 54801 98 + 1
CUAAUCAUCAUUAACAAUUACACAACGUAGCUGACUCUGGUGAUUAGUCGGACCAUGCGGGUCCGAGGGCC-GAGUCCCACCC--CAAUCAAGUCUAAUCA
((((((((((....((.((((.....)))).))....))))))))))(((((((.....)))))))(((..-....)))....--................ ( -28.80)
>DroEre_CAF1 55250 98 + 1
CUAAUCAUCAUUAACAAUUACACAACGUAGCUGACUCUGGUGAUUAGUCGGACCAGGCGGGUCCGAGGGGCC-AGUCCCACCC--CCAUCAAGUCUAAUCA
((((((((((....((.((((.....)))).))....))))))))))(((((((.....)))))))((((..-........))--)).............. ( -31.20)
>DroYak_CAF1 69209 98 + 1
CUAAUCAUCAUUAACAAUUACACAACGUAGCUGACUUUGGUGAUUAGUCGGACCAUGCGGGUCCGAGGGGCCGAGUCCCACC---CCAUCAAGUCUAAUCA
((((((((((....((.((((.....)))).))....))))))))))(((((((.....)))))))(((((...)))))...---................ ( -32.70)
>DroAna_CAF1 52631 92 + 1
CUAAUCAUCAUUAACAAUUACACAACGUAGCUGUCUCGGGUGAUUAGA----CUGUGCGU----GGGGGGC-GUCUCUCACUCCACCAUUAGAUUUGGUCA
(((((((((....(((.((((.....)))).)))....))))))))).----......((----(((((..-..)))))))...((((.......)))).. ( -25.90)
>consensus
CUAAUCAUCAUUAACAAUUACACAACGUAGCUGACUCUGGUGAUUAGUCGGACCAUGCGGGUCCGAGGGCC_GAGUCCCACCC__CCAUCAAGUCUAAUCA
((((((((((....((.((((.....)))).))....))))))))))(((((((.....)))))))(((.......)))...................... (-24.05 = -24.87 +   0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:42 2006