Locus 8702

Sequence ID	3L_DroMel_CAF1
Location	22,591,896 – 22,592,101
Length	205
Max. P	0.923690

overview

Window 9

Location	22,591,896 – 22,592,008
Length	112
Sequences	6
Columns	114
Reading direction	forward
Mean pairwise identity	91.09
Mean single sequence MFE	-19.53
Consensus MFE	-15.63
Energy contribution	-15.77
Covariance contribution	0.14
Combinations/Pair	1.12
Mean z-score	-2.98
Structure conservation index	0.80
SVM decision value	0.94
SVM RNA-class probability	0.885261
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22591896 112 + 23771897
CUUCAUGUCUAAUUUAGCGACAUUUUAUUGUACUUUU-CACCACAAUCGUU-UUCCAUUGUUGUAAUACAAUUUUCUUGUCGCAUUUCGGCCAAGUUAUUCUAUGCCACUCUAU
................((((((....((((((.....-.((.(((((.(..-..).))))).))..)))))).....)))))).....(((..((.....))..)))....... ( -19.60)
>DroVir_CAF1 61305 110 + 1
CUUCAUGUCUAAUUUAGCGACAUUUUAUUGUACUUUU-CGCCGCAAUCGCU-UUCCAUUGUUGAAAUACAAUUUUCUUGUCGCAUUUUAGUCAAGUUAUUUUAUUUUAUUCU--
.....((.((((..(.((((((....((((((..(((-((..(((((....-....)))))))))))))))).....)))))))..)))).))...................-- ( -21.70)
>DroGri_CAF1 50736 110 + 1
CUUCAUGUCUAAUUUAGCGACAUUUUAUUGUACUUUU-CGCCGCAAUCUCU-UUCCAUUGUUGUAAUACAAUUUUCUUGUCGCAUUUUAGUCAAGUUAUUUUAUUUUAUUGU--
.....((.((((..(.((((((....((((((....(-..(.(((((....-....))))).)..))))))).....)))))))..)))).))...................-- ( -19.50)
>DroWil_CAF1 65104 114 + 1
CUUCAUGUCUCAUUUAGCGACAUUUCAUUGUACUUUUGCACCGCAAUCGCUUUUCCAUUGUUGUAAUACAAUUUUCUUGUCGCAUUUUAGUCAAGUUAUUUUAUUUUAUUUUCU
................((((((....((((((...(((((..(((((.(.....).)))))))))))))))).....))))))............................... ( -17.30)
>DroMoj_CAF1 76567 110 + 1
CUUCAUGUCUAAUUUAGCGACAUUUUAUUGUAGUUUU-CGCCGCAAUCGCU-UUCCAUUGUUGAAAUACAAUUUUCUUGUCGCAUUUUAGUCAAGUUAUUUUAUUUUAUUGU--
.....((.((((..(.((((((....((((((..(((-((..(((((....-....)))))))))))))))).....)))))))..)))).))...................-- ( -21.70)
>DroAna_CAF1 43553 112 + 1
CUUCAUGUCUAAUUUAGCGACAUUUUAUUGUACUUUU-CACCACAAUCGCU-UUCCAUUGUUGUAAUACAAUUUUCUUGUCGCAUUUUGGCCAAGUUAUUCUAUUCCACUCUGU
.....((.((((..(.((((((....((((((.....-.((.(((((....-....))))).))..)))))).....)))))))..)))).))..................... ( -17.40)
>consensus
CUUCAUGUCUAAUUUAGCGACAUUUUAUUGUACUUUU_CACCGCAAUCGCU_UUCCAUUGUUGUAAUACAAUUUUCUUGUCGCAUUUUAGUCAAGUUAUUUUAUUUUAUUCU__
.....((.((((..(.((((((....((((((.......((.(((((.........))))).))..)))))).....)))))))..)))).))..................... (-15.63 = -15.77 +   0.14)

alignment

secondary structure

dotplot

Window 0

Location	22,592,008 – 22,592,101
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	95.70
Mean single sequence MFE	-22.78
Consensus MFE	-18.46
Energy contribution	-18.50
Covariance contribution	0.04
Combinations/Pair	1.05
Mean z-score	-2.09
Structure conservation index	0.81
SVM decision value	1.16
SVM RNA-class probability	0.923690
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22592008 93 - 23771897
AACAACAUUUUGCGGCCAACAUUAAGCCCAACAGAAGUGGGCAGCAGGAUGGUGAUGUGGCAACAACAAUGAACCGAAAUGAAAUGAACUAAA
.....(((((((..((((.((((..(((((.......))))).((......))))))))))..))).))))...................... ( -21.40)
>DroSec_CAF1 48707 93 - 1
AACAACAUUUUGCGGCCAACAUAAGGCCCAACAGAAGUGGGCAGCAGGAUGGGGAUGUGGCAACAACAAUGAACCGAAAUGAAAUGAACUAAA
.....((((((.((((((.(.....(((((.......))))).....).)))...((((....).))).....)))....))))))....... ( -21.50)
>DroSim_CAF1 48801 93 - 1
AACAACAUUUUGCGGCCAACAUUAAGCCCAACAGAAGUGGGCAGCGGGAUGGGGAUGUGGCAGCAACAAUGAACCGAAAUGAAAUGAACUAAA
.....((((((((.((((.((((..(((((.......)))))..(......).)))))))).)))).))))...................... ( -22.60)
>DroEre_CAF1 49404 92 - 1
AACAACAUUUUGCGGCCAACAUUAAGCCCAACAGAAGUGGGCAGCAGGCUGGGGAUGUGGCAGCAACAAAGAGC-GAAAUGAAAUGAACUAAA
.....((((((((.((((.((((..(((((.......)))))((....))...))))))))...........))-))))))............ ( -24.70)
>DroYak_CAF1 62128 93 - 1
AACAACAUUUUGCGGCCAACAUUAAGCCCAACAGAAGUGGGCAGCAGGAUGGGGAUGUGGCAACAACAAUGAGCCGAAAUGAAAUGAACUAAA
.....((((((.((((((.((((..(((((.......))))).....))))....((((....).))).)).))))....))))))....... ( -23.70)
>consensus
AACAACAUUUUGCGGCCAACAUUAAGCCCAACAGAAGUGGGCAGCAGGAUGGGGAUGUGGCAACAACAAUGAACCGAAAUGAAAUGAACUAAA
..(..(((((((((.....).....(((((.......))))).))))))))..).((((....).)))......................... (-18.46 = -18.50 +   0.04)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:39 2006