| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,583,410 – 22,583,529 |
| Length | 119 |
| Max. P | 0.500000 |
| Location | 22,583,410 – 22,583,529 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.37 |
| Mean single sequence MFE | -40.54 |
| Consensus MFE | -20.23 |
| Energy contribution | -20.07 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22583410 119 - 23771897 CUUGGCGUUGGCCAGACGUAGCAGAAUGUCGACAUGGGCCUUAAAACCCCUCUGAAUGGGUCGGUUCAGGUG-CAUGUCCAUAUUCAUUGUGUUGUUAGCUAUGGUUAUCGUGAAGUUUU (((.(((.((((((....(((((((((((.((((((.((((...((((.(((.....)))..)))).)))).-)))))).)))))).......)))))....)))))).))).))).... ( -41.01) >DroVir_CAF1 50980 119 - 1 CUUGGCAUUGGCCACUCGCAGUUGGUAGUCGACGUGGGCCUUGAAGCCUCGCUGAAUAGGUCUGGCCAAUUC-CAUAUCCAUGUUAAGGGUUUUAUUCGCAAUCGAAACACUAAAGUUCU ..(((.((((((((..(((.((((.....)))))))(((((...(((...)))....))))))))))))).)-))...........((..(((((((((....))))....)))))..)) ( -33.50) >DroPse_CAF1 42226 119 - 1 CUUGGCAUUCGCCAGCCGCAGCUGGAUGUCGAUGUGCACCCUGAAGCCCCUCAGGAUGGGCCUGUUGAGGUC-CAUGUCCAUGUUCAUCAUAUUCUUCGAAAUGGUCAGCGAGAAGUUCU .......(((((..((((..(..((((((.((((.(((.(((((......)))))((((((((....)))))-))).....))).))))))))))..)....))))..)))))....... ( -39.60) >DroSim_CAF1 38631 119 - 1 CUUGGCGUUGGCCAGACGUAGCAGAAUGUCGACAUGGGCCUUGAAACCCCUCUGAAUGGGUCGGUUCAGGUG-CAUGUCCAUAUUCAUUGUGUUGUUAGCUAUGGUUAUCGUGAAGUUCU (((.(((.((((((....(((((((((((.((((((.((((.(((..(((.......)))....))))))).-)))))).)))))).......)))))....)))))).))).))).... ( -42.31) >DroEre_CAF1 40996 119 - 1 CUUUGCGUUGGCCAGACGCAGCAGAAUAUCGAUAUGGGCCUUGAAACCCCUCUGAAUGGGUCGGUUCAGGUG-CAUGUCCAUAUUCAUUGUGUUGUUAACUAUGGUCAUCGCAAAGCUUU (((((((.(((((((((((((..((((((.((((((.((((.(((..(((.......)))....))))))).-)))))).)))))).)))))))........)))))).))))))).... ( -48.50) >DroPer_CAF1 54926 120 - 1 CUUGGCAUUCGCCAGCCGCAGCUGGAUGUCGAUGUGCACCCUGAAGCCCCUCAGGAUGGGCCUGUUGAGGUCCCAUGUCCAUGUUCAUCAUAUUCCUCGAAAUGGUCAGCGAGAAGUUCU ...(((((...(((((....))))))))))((((.(((.(((((......)))))((((((((....))).))))).....))).))))......((((..........))))....... ( -38.30) >consensus CUUGGCAUUGGCCAGACGCAGCAGAAUGUCGACAUGGGCCUUGAAACCCCUCUGAAUGGGUCGGUUCAGGUC_CAUGUCCAUAUUCAUUGUGUUGUUAGCAAUGGUCAUCGUGAAGUUCU .(((((....)))))........((((((.((((((..(((.((.((((........))))...)).)))...)))))).)))))).................................. (-20.23 = -20.07 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:38 2006