Locus 8700

Sequence ID 3L_DroMel_CAF1
Location 22,578,391 – 22,578,482
Length 91
Max. P 0.618090
window14257

overview

Window 7

Location 22,578,391 – 22,578,482
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.18
Mean single sequence MFE -27.17
Consensus MFE -15.87
Energy contribution -15.98
Covariance contribution 0.11
Combinations/Pair 1.25
Mean z-score -1.69
Structure conservation index 0.58
SVM decision value 0.17
SVM RNA-class probability 0.618090
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22578391 91 + 23771897
CUCCGUGCAUU--GUUGCAAUGUAACGGCGUAAGCAGAAUUACGUGCAAUUGUUUUCUGCAGU--GGU----UCGUGCACAUAAAUGCGGCAUUCGGGA
.((((.....(--((((((((((.((.((....)).(((((((.((((.........))))))--)))----))))..))))...)))))))..)))). ( -29.30)
>DroVir_CAF1 46043 88 + 1
C-CCGUGCAUU--GUUGCAAUGUUACGAAGUAAGCAGAAUUACGUGCAUUUGUUCUCUGCAGUGCGGC----UCGUGUACAUAAAUACGAGAUGC----
.-(((..(.((--((.((...)).)))).....(((((...(((......)))..))))).)..)))(----((((((......)))))))....---- ( -25.30)
>DroGri_CAF1 30195 93 + 1
GCCCGUGCAUU--GUUGCAAUGCUACGGCGUAAGCAGAAUUACGUGCAAUUGUUCUCUGCAGCUCGGCUUGUUCGUGUACAUAAAUACGAGAUGU----
(((((((((((--(...)))))).)))((....(((((...(((......)))..))))).))..)))...(((((((......)))))))....---- ( -27.10)
>DroWil_CAF1 39446 93 + 1
UUUUUUGCAUUGUGUUGCAAUGUUACGGCGUAAGCAGAAUUACGUGCAAUUGUUUUCUGCAGU--GGU----UCGUGUACAUAAAUACAGCGGCAAAGA
.(((((((.(((((((...(((((((.((....)).(((((((.((((.........))))))--)))----))))).)))).)))))))..))))))) ( -29.20)
>DroMoj_CAF1 57139 89 + 1
CACCGUGCCCC--GUUGCAAUGUUACGAAGUAAGCAGAAUUACGUGCAUUUGUUCUCUGCAGUGCGGU----UCGUGCACAUAAAUACGAGAUGC----
.((((..(..(--((.((...)).)))......(((((...(((......)))..))))).)..))))----(((((........))))).....---- ( -21.40)
>DroAna_CAF1 29556 91 + 1
UGCCGUGCAUU--GUAGCAAUGUAACAGCGUAAGCAGAAUUACGUGCAAUUGUUUUCUGCAGU--GGU----UCGUGCACAUAAACGCGGCAUUGUAGA
(((((((...(--((.(((........((....)).(((((((.((((.........))))))--)))----)).))))))....)))))))....... ( -30.70)
>consensus
CUCCGUGCAUU__GUUGCAAUGUUACGGCGUAAGCAGAAUUACGUGCAAUUGUUCUCUGCAGU__GGU____UCGUGCACAUAAAUACGACAUGC____
....((((((......((.((((....))))..(((((...(((......)))..)))))......))......))))))................... (-15.87 = -15.98 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:37 2006