Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,569,445 – 22,569,540 |
Length | 95 |
Max. P | 0.939219 |
Location | 22,569,445 – 22,569,540 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 97.19 |
Mean single sequence MFE | -18.53 |
Consensus MFE | -18.71 |
Energy contribution | -18.60 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 1.01 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22569445 95 + 23771897 UUGUACACUAUGGAGUUGUGUGUUUUACGCUUUUUGUCAACAUUUUGUUUUCAGAUACUUUUGUGGACUUUUUCACAGCAUUCGCUGCUGCCUUU ..((.(((...(((((.(((((...)))))..((((..(((.....)))..)))).))))).))).)).......(((((.....)))))..... ( -15.80) >DroSec_CAF1 25449 95 + 1 UUGUACACUAUGAAGUUGUGUGUUUUACGCUUUUUGUCAACAUUUUGUUUUCAGAUGCUUUUGUGUACUUUUUCACAGCAUUCGCCGCUGCCUUU ..((((((...(((((.(((((...)))))..((((..(((.....)))..)))).))))).)))))).......((((.......))))..... ( -19.90) >DroSim_CAF1 23949 95 + 1 UUGUACACUAUGAAGUUGUGUGUUUUACGCUUUUUGUCAACAUUUUGUUUUCAGAUGCUUUUGUGUACUUUUUCACAGCAUUCGCCGCUGCCUUU ..((((((...(((((.(((((...)))))..((((..(((.....)))..)))).))))).)))))).......((((.......))))..... ( -19.90) >consensus UUGUACACUAUGAAGUUGUGUGUUUUACGCUUUUUGUCAACAUUUUGUUUUCAGAUGCUUUUGUGUACUUUUUCACAGCAUUCGCCGCUGCCUUU ..((((((...(((((.(((((...)))))..((((..(((.....)))..)))).))))).)))))).......((((.......))))..... (-18.71 = -18.60 + -0.11)
Location | 22,569,445 – 22,569,540 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 97.19 |
Mean single sequence MFE | -16.47 |
Consensus MFE | -16.41 |
Energy contribution | -16.30 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -2.10 |
Structure conservation index | 1.00 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22569445 95 - 23771897 AAAGGCAGCAGCGAAUGCUGUGAAAAAGUCCACAAAAGUAUCUGAAAACAAAAUGUUGACAAAAAGCGUAAAACACACAACUCCAUAGUGUACAA ....((.(((((....)))))......(((.(((...((........))....))).))).....)).......((((.........)))).... ( -14.00) >DroSec_CAF1 25449 95 - 1 AAAGGCAGCGGCGAAUGCUGUGAAAAAGUACACAAAAGCAUCUGAAAACAAAAUGUUGACAAAAAGCGUAAAACACACAACUUCAUAGUGUACAA ....((((((.....))))))......((((((....((...((..(((.....)))..))....))((.....))...........)))))).. ( -17.70) >DroSim_CAF1 23949 95 - 1 AAAGGCAGCGGCGAAUGCUGUGAAAAAGUACACAAAAGCAUCUGAAAACAAAAUGUUGACAAAAAGCGUAAAACACACAACUUCAUAGUGUACAA ....((((((.....))))))......((((((....((...((..(((.....)))..))....))((.....))...........)))))).. ( -17.70) >consensus AAAGGCAGCGGCGAAUGCUGUGAAAAAGUACACAAAAGCAUCUGAAAACAAAAUGUUGACAAAAAGCGUAAAACACACAACUUCAUAGUGUACAA ....((((((.....))))))......((((((....((...((..(((.....)))..))....))((.....))...........)))))).. (-16.41 = -16.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:36 2006