| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,566,193 – 22,566,289 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 22,566,193 – 22,566,289 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 60.09 |
| Mean single sequence MFE | -24.66 |
| Consensus MFE | -12.06 |
| Energy contribution | -12.09 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.49 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22566193 96 - 23771897 -----------------------ACCCGAGACCUAAAAGAAGACGCAGCCCCAGACUCCAGGCCACACUUACGGGCACACCCGAACCCGGAGCUCACUUCCGUCAACGGGAAGUCAUAA -----------------------.((((....(.....)..((((.......((.((((((......))..((((....)))).....))))))......))))..))))......... ( -22.02) >DroPse_CAF1 25002 95 - 1 -----AA------CUCAGACUCAGACUCAGUCUGAGAGUGAGACGGAGACCCCGACCCCG------ACGU-GGGGCACACAU------GAAGCUCACUUCCGUCAACGGGAAGUCAUAA -----..------((((((((.......)))))))).(((((.(((.....))).((((.------....-)))).......------....)))))(((((....)))))........ ( -32.80) >DroSec_CAF1 21276 119 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGACGCAGCCCCAGACUCCAGGCCACACUUACGAGCACCACCCGACCCAGAGCUCACUUCCGUCAACGGGAAGUCAUAA .........................................(((...(((..........))).........((((...............))))..(((((....))))).))).... ( -15.26) >DroYak_CAF1 33900 96 - 1 -----------------------ACCCGAGACCUAAAAGAAGACGCAGCCCCAGACUUCGGGCCACAUUUACGGGCACACACGAACCCGGAGCUCACUUCCGUCAACGGGAAGUCAUAA -----------------------.((((.(((......((((..((.((((........))))........((((..(....)..))))..))...)))).)))..))))......... ( -23.60) >DroAna_CAF1 17440 95 - 1 -----------------------ACCCAAGACCCCAGAGAAGACUCUAUUCCGGACUCCUAGCUGCACUCACGGGCG-ACUCACUCAUGGAGCUCGCUACCGUCGACGGGAAGUCAUAA -----------------------......((((((((((....)))).....................(((((((((-((((.(....)))).))))..)))).)).)))..))).... ( -23.20) >DroPer_CAF1 37307 95 - 1 -----AA------CUCAGACUCAGACUGAGACUGAGACUGAGACUGAGACCCCGACCCCG------ACGU-GGGGCACACAU------GAAGCUCACUUCCGUCAACGGGAAGUCAUAA -----..------(((((.(((((.......))))).))))).....(((((((.((((.------....-)))).......------((((....))))......))))..))).... ( -31.10) >consensus _______________________ACCCGAGACCGAAAAGAAGACGCAGCCCCAGACUCCGGGCCACACUUACGGGCACACAC__ACCCGGAGCUCACUUCCGUCAACGGGAAGUCAUAA .........................................(((............................((((...............))))..(((((....))))).))).... (-12.06 = -12.09 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:34 2006