Locus 8697

Sequence ID 3L_DroMel_CAF1
Location 22,565,154 – 22,565,254
Length 100
Max. P 0.835021
window14253

overview

Window 3

Location 22,565,154 – 22,565,254
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.13
Mean single sequence MFE -25.08
Consensus MFE -15.65
Energy contribution -15.65
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.62
SVM decision value 0.73
SVM RNA-class probability 0.835021
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22565154 100 + 23771897
GUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUUGGCAACAAAAGUGGCCAAC-AC-UGACCCGCUCCCCCUA----UU--------------U
.(((.....))).(((......((((((((.....)))))))).........((((.((((((.((....)).))))))-..-))))..))).......----..--------------. ( -25.20)
>DroVir_CAF1 35836 112 + 1
GUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGGAAUAUGUCGAGUUGGCAACAAAA-UGGCCACCGAA-UGCCCCCC-----GUUGCUCG-UUGCCCCCGCCACAC
..((((..(((((.(((.....((((((((.....))))))))((((.....((((..(((....)))..-))))..)))).-))).....-----.)))))..-))))........... ( -28.00)
>DroGri_CAF1 20422 116 + 1
GUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUUGGCAACAAAA-UGGCCACCAAAAUGCC-CCUACCCCCUAACCCUCUAGCUCCUAUCAC--
.(((.....))).(((......((((((((.....)))))))).........((((..(((....)))..-))))............-...................)))........-- ( -18.70)
>DroMoj_CAF1 42428 93 + 1
GUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUUGGCAACAAAA-UGGCCACCGAC-UGCGCCCU-------------------------ACGC
(((((.................((((((((.....)))))))).........((((.((.(((.......-..)))))))))-)))))...-------------------------.... ( -23.00)
>DroAna_CAF1 16481 93 + 1
GUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUUGGCAACAAAAAUGGC-AGC-------CCGGCUGCCGCUG----GC---------------
.(((.....))).(((......((((((((.....))))))))((((......)))).(((....)))....(((-(((-------...))))))))).----..--------------- ( -26.00)
>DroPer_CAF1 35124 104 + 1
GUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAUAUUUACGUGAUUGAAAUAUGUCGAGUUGGCAACAAAAAUGGCCAACGAC-UGACCCGCUCCCGCUC----CC-----------GCAU
(((((...(((..(((......((((((((.....)))))))).........((((.((((((..........))))))...-))))..)))...))).----.)-----------)))) ( -29.60)
>consensus
GUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUUGGCAACAAAA_UGGCCACCGAC_UGCCCCCCUCCC_CUA____GC___________AC__
.(((.....)))..........((((((((.....)))))))).........((((..(((....)))...))))............................................. (-15.65 = -15.65 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:33 2006