Locus 8696

Sequence ID 3L_DroMel_CAF1
Location 22,559,889 – 22,559,989
Length 100
Max. P 0.980757
window14252

overview

Window 2

Location 22,559,889 – 22,559,989
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 87.89
Mean single sequence MFE -21.53
Consensus MFE -19.52
Energy contribution -19.77
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.91
SVM decision value 1.87
SVM RNA-class probability 0.980757
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22559889 100 + 23771897
CCGAACGCUUCAUCGUAGAUGUAAUGUGAAUUUACGGGCCAGCAAAAUCCAAACAAACGCGCUGCACCACCGCAGCGCCCCAUCGCCGCCUACUCGCCCC
.(((..(((...((((((((.........))))))))...)))...............(((((((......)))))))....)))............... ( -26.10)
>DroSec_CAF1 14885 86 + 1
CCAAACGCUUCAUCGUAGAUGUAAUGUGAAUUUACGGGCCAGCAAAAUCCAAACAAACUCGCUGCACCACCGCAGCGCACCA--------------CCCC
......(((...((((((((.........))))))))...)))................((((((......)))))).....--------------.... ( -20.60)
>DroSim_CAF1 12153 86 + 1
CCAAACGCUUCAUCGUAGAUGUAAUGUGAAUUUACGGGCCAGCAAAAUCCAAACAAACUCGCUGCACCACCGCAGCGCACCA--------------CCCC
......(((...((((((((.........))))))))...)))................((((((......)))))).....--------------.... ( -20.60)
>DroYak_CAF1 26926 95 + 1
CCAAACGCUUCAUCGUAGAUGUAAUGUGAAUUUACGGGCCAGCAAAAUCCAAACAAACUCGCUGCACCACCGCAGCCCCC-A----CGCCCACUCACCCC
......(((...((((((((.........))))))))...))).................(((((......)))))....-.----.............. ( -18.80)
>consensus
CCAAACGCUUCAUCGUAGAUGUAAUGUGAAUUUACGGGCCAGCAAAAUCCAAACAAACUCGCUGCACCACCGCAGCGCACCA______________CCCC
......(((...((((((((.........))))))))...)))................((((((......))))))....................... (-19.52 = -19.77 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:32 2006