| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,548,602 – 22,548,704 |
| Length | 102 |
| Max. P | 0.833914 |
| Location | 22,548,602 – 22,548,704 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 81.25 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -20.51 |
| Energy contribution | -20.07 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.833914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22548602 102 + 23771897 CAUUAAAUCGCAUUUGGUCAGCCGAUUGCUGGCGCUGGGCACUUUGCAUCGCGAUAGGCUUUCCGUCUCUCUCCCCCCCGGCCCCCCCCCACCCAUCCUCCU .........(((.((((....)))).))).((.((((((......((...))((.((((.....)))).)).....)))))))).................. ( -25.10) >DroSec_CAF1 11002 84 + 1 CAUUAAAUCGCAUUUGGUCAGUCGAUUGCUGGCGCUGGGCACUUUGCAUCGCGAUAGGCUUUCCGCCACUCC---------------CCCUGC---CCUUCU ................((((((.....))))))...(((((..((((...))))..(((.....))).....---------------...)))---)).... ( -20.70) >DroSim_CAF1 8270 84 + 1 CAUUAAAUCGCAUUUGGUCAGUCGAUUGCUGGCGCUGGGCACUUUGCAUCGCGAUAGGCUUUCCGCCUCCCC---------------CCCACC---CCUCCA ......(((((.....((((((.....)))))).....((.....))...)))))((((.....))))....---------------......---...... ( -19.70) >consensus CAUUAAAUCGCAUUUGGUCAGUCGAUUGCUGGCGCUGGGCACUUUGCAUCGCGAUAGGCUUUCCGCCUCUCC_______________CCCACC___CCUCCU .........(((.((((....)))).))).((((..((((...((((...))))...))))..))))................................... (-20.51 = -20.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:31 2006