Locus 8694

Sequence ID 3L_DroMel_CAF1
Location 22,548,133 – 22,548,229
Length 96
Max. P 0.591676
window14250

overview

Window 0

Location 22,548,133 – 22,548,229
Length 96
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 83.08
Mean single sequence MFE -26.05
Consensus MFE -15.51
Energy contribution -16.65
Covariance contribution 1.14
Combinations/Pair 1.22
Mean z-score -2.48
Structure conservation index 0.60
SVM decision value 0.12
SVM RNA-class probability 0.591676
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22548133 96 + 23771897
AAUAUUGAAUCGUGCGUAAUUUACGAUAAAAAGGGGAAAAUUGGAAAAGUUUUCCCCCAUUACCGC-CCCAGAUUUAGUAGUAAGUAGGACUGGGGU
........((((((.......)))))).....((((((((((.....)))))))))).......((-(((((.((((.(....).)))).))))))) ( -30.70)
>DroPse_CAF1 9857 86 + 1
AAUAUUGAAUUGUGCGUAAUUUACGAUAAAAAGGGGAAAAUUGGAAAAGUUUUAC--CAGUCU------GCGA--CGGUGGAAAGGGG-CAUGGGGC
.........(..(((.(..(((((........((..((((((.....)))))).)--).(((.------..))--).)))))...).)-))..)... ( -14.40)
>DroSec_CAF1 10536 96 + 1
AAUAUUGAAUCGUGCGUAAUUUACGAUAAAAAGGGGAAAAUUGGAAAAGUUUUCCCCCAGUCCCGU-CUCAGAUUUAGUAGUAAGUAGGACUGGGGC
........((((((.......)))))).....((((((((((.....))))))))))..(((((((-((...(((((....))))).)))).))))) ( -29.60)
>DroSim_CAF1 7804 96 + 1
AAUAUUGAAUCGUGCGUAAUUUACGAUAAAAAGGGGAAAAUUGGAAAAGUUUUCCCCCAGUCCCGU-CCGAGAUUUAGUAGUAAGUAGGACUGGGGC
........((((((.......)))))).....((((((((((.....))))))))))..(((((((-((...(((((....))))).)))).))))) ( -32.60)
>DroEre_CAF1 10817 97 + 1
AAUAUUGAAUCGUGCGUAAUUUACGAUAAAAAGGGGAAAAUUGGAAAAGUUUUCCCCCAGUCCCGCUCCCAGAUUUAGUAGUAAGUAGGACUGGGGC
........((((((.......)))))).....((((((((((.....))))))))))..((((((.(((...(((((....))))).))).)))))) ( -30.40)
>DroAna_CAF1 7635 88 + 1
AAUAUUGAAUUGUGCGUAAUUUACGAUAAAAAGGGGAAAAUUGGAAAAGUUUUUCC-CAGUCUCCAACCUACACUCA------UGCGGGA--GGUCC
.........((((.((((...))))))))...((((((((((.....)))))))))-)..(((((..(.........------.)..)))--))... ( -18.60)
>consensus
AAUAUUGAAUCGUGCGUAAUUUACGAUAAAAAGGGGAAAAUUGGAAAAGUUUUCCCCCAGUCCCGC_CCCAGAUUUAGUAGUAAGUAGGACUGGGGC
..(((((((((...((((...)))).......((((((((((.....))))))))))..............)))))))))................. (-15.51 = -16.65 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:30 2006