Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,540,119 – 22,540,211 |
Length | 92 |
Max. P | 0.759725 |
Location | 22,540,119 – 22,540,211 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -32.89 |
Energy contribution | -32.70 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.60 |
Structure conservation index | 0.86 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22540119 92 + 23771897 -----------------------UCCCACUCGGAGAUUGACACAGCAACUGUUGCGUCAAGUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACAAAGCAGUU -----------------------..((((.(((...(((((.((((....)))).))))).))).)))).....((.....(((.(((((....)).))).))).....)).... ( -30.80) >DroSec_CAF1 2555 115 + 1 UCAUCCGCCGCGGGGUGGUCCCGUCCCACUCGGAGAUUGACGCGGCAACUGUUGCGUCAAAUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGCACUU ......((.(.((((..(((((.(((........((((((((((((....)))))))).))))((.((....))))))).)))))..))((((....)))).)).)...)).... ( -47.00) >DroSim_CAF1 2 93 + 1 ----------------------GUCCCACUCGGAGAUUGACGCGGCAACUGUUGCGUCAAGUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGCACUU ----------------------...((((.(((...((((((((((....)))))))))).))).))))....((.(((.((.....))((((....))))))).))........ ( -35.40) >DroYak_CAF1 1942 109 + 1 UCAUCCGCUGUGGCGUG-----GUCCCACUCGAAGAUUGACGC-GCAAUUGUUGCGUCAAGUCGUGUGGAAACAACGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGUAGUU ......(((((((.(..-----(((((((.(((...(((((((-((....).)))))))).))).))(....).......)))))..).((((....)))).))))..))).... ( -39.70) >consensus ______________________GUCCCACUCGGAGAUUGACGCGGCAACUGUUGCGUCAAGUCGUGUGGAAACAGCGGAAGGGAUUGCCGUGCCUGAGCACUCCACUAAGCACUU .........................((((.(((...((((((((((....)))))))))).))).)))).....((.....(((.(((((....)).))).))).....)).... (-32.89 = -32.70 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:29 2006