Locus 8689

Sequence ID 3L_DroMel_CAF1
Location 22,532,555 – 22,532,654
Length 99
Max. P 0.514615
window14240

overview

Window 0

Location 22,532,555 – 22,532,654
Length 99
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 86.06
Mean single sequence MFE -19.26
Consensus MFE -12.30
Energy contribution -12.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.64
SVM decision value -0.04
SVM RNA-class probability 0.514615
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22532555 99 + 23771897
GUCCUCGU--UGCUCCAACUCCACAGCUAUCUCCACACCCUAUCCAUUCCG------CCUCCGC-CCUGGAGGACGUCAGUUGACUUUGAAAAUCAAUUAACAACAUC
((((((((--((...........)))).......................(------(....))-....))))))....((((...(((.....)))....))))... ( -16.10)
>DroSec_CAF1 15998 100 + 1
GUCCUCGG--CGCUCCAUCUCCAUCUCUAUCUCCACACCCUGUCCAUUCCC------CCUCCGACACUGGAGGACGCCAGUUGACUUUGAAAAUCAAUUAACAACAUC
......((--((......................((.....))........------((((((....)))))).)))).((((...(((.....)))....))))... ( -18.40)
>DroSim_CAF1 16861 100 + 1
GUCCUCGG--CGCUCCAUCUCCAUCUCUAUCUCCACACCCUGUCCAUUCCC------CCUCCGACACUGGAGGACGCCAGUUGACUUUGAAAAUCAAUUAACAACAUC
......((--((......................((.....))........------((((((....)))))).)))).((((...(((.....)))....))))... ( -18.40)
>DroEre_CAF1 14967 108 + 1
GUCCUCGGGUUGCUCCGUCUCCAUCUCUAUCGGCACACCCAUUCCGCCCCGCCUCCGCCUCCGCCCCUGGAGGACGCCAGUUGACUUUGAAAAUCAAUUAACAACAUC
((((((((((((((.................)))).)))).....((...((....))....)).....))))))....((((...(((.....)))....))))... ( -24.13)
>consensus
GUCCUCGG__CGCUCCAUCUCCAUCUCUAUCUCCACACCCUGUCCAUUCCC______CCUCCGACACUGGAGGACGCCAGUUGACUUUGAAAAUCAAUUAACAACAUC
.........................................................((((((....))))))......((((...(((.....)))....))))... (-12.30 = -12.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:21 2006