Locus 8688

Sequence ID 3L_DroMel_CAF1
Location 22,531,592 – 22,531,685
Length 93
Max. P 0.811262
window14239

overview

Window 9

Location 22,531,592 – 22,531,685
Length 93
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 78.54
Mean single sequence MFE -21.41
Consensus MFE -13.27
Energy contribution -13.02
Covariance contribution -0.25
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.62
SVM decision value 0.65
SVM RNA-class probability 0.811262
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22531592 93 + 23771897
UUUCCCUCCCGCAGGCG------GAAUACACCCUUUAUUCUCUC---------UUCGCUC--CC--CUCUUUAACCCUGUCGGAAUGCAUUUAGCGUUGAAUGCAAAUACAC
......(((.(((((.(------(((((.......))))))...---------.......--..--.........))))).))).((((((((....))))))))....... ( -16.75)
>DroPse_CAF1 38249 112 + 1
UUUUCCUCCCGCAGGCAGGCCAGGACUCCACUCCUCUGGCCCCCCUUCCCCCCUUGCCCCUUGCCGCUGCCCAACCCUGUCGGAAUGCAUUUAGCGUUAAAUGCAAAUACAC
......(((.(((((..(((((((..........)))))))..............((........))........))))).))).((((((((....))))))))....... ( -28.30)
>DroSec_CAF1 15062 93 + 1
UUUCCCUCCCGCAGGCG------GAAUCCACCCCUUAUUCCCCC---------UUCGCUC--CC--CUCGUCAACCCUGUCGGUAUGCAUUUAGCGUUGAAUGCAAAUACAC
.........((.(((.(------((((.........))))).))---------).))...--..--..((.((....)).))(((((((((((....))))))))..))).. ( -17.20)
>DroSim_CAF1 15918 93 + 1
UUUCCCUCCCGCAGGCG------GAAUCCACCCCUUAUUCCCCC---------UUCGCUC--CC--CUCGUCAACCCUGUCGGAAUGCAUUUAGCGUUGAAUGCAAAUACAC
......(((.(((((.(------((((.........)))))...---------...((..--..--...))....))))).))).((((((((....))))))))....... ( -18.10)
>DroEre_CAF1 14032 91 + 1
UUUCCCUGCCGCAGGCG-----GGAAUCCACC-CUUGCCCACCC---------CUCCCUC--CC--CGCAUC--CCCUGUCGGAAUGCAUUUAGCGUUAAAUGCAAAUACAC
........(((((((.(-----((......))-).(((......---------.......--..--.)))..--.)))).)))..((((((((....))))))))....... ( -20.29)
>DroPer_CAF1 43043 103 + 1
UUUUCCUCCCGCAGGCAGGCCAGGACUCCACUCCUCUGGCCCCC---------UUCCCCCUGCCCGCUGCCCAACCCUGUCGGAAUGCAUUUAGCGUUAAAUGCAAAUACAC
......(((.(((((..(((((((..........)))))))...---------........((.....)).....))))).))).((((((((....))))))))....... ( -27.80)
>consensus
UUUCCCUCCCGCAGGCG______GAAUCCACCCCUUAUUCCCCC_________UUCCCUC__CC__CUCCUCAACCCUGUCGGAAUGCAUUUAGCGUUAAAUGCAAAUACAC
........(((((((............................................................)))).)))..((((((((....))))))))....... (-13.27 = -13.02 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:20 2006