Locus 8686

Sequence ID 3L_DroMel_CAF1
Location 22,529,913 – 22,530,045
Length 132
Max. P 0.984895
window14234 window14235

overview

Window 4

Location 22,529,913 – 22,530,005
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 74.32
Mean single sequence MFE -15.67
Consensus MFE -9.93
Energy contribution -9.93
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.63
SVM decision value 1.99
SVM RNA-class probability 0.984895
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22529913 92 - 23771897
CUAAUGAGUAAUGGUUUUGGAACCCAAAACCAUAGUCAAACGAAUUCGAAACGGAGUCCACAACUAACGACACCACAGACCUUUUCGUUUCU
....(((.((.(((((((((...))))))))))).))).........(((((((.(((..........))).))...((.....))))))). ( -22.20)
>DroSec_CAF1 13415 73 - 1
CUUAUGAGUAAUGGUUUUGGAGCCCAAAUCCAUAGUCAAAUGAAUUCU--------UCUUCAAAUG-----------AACCUUCUCUUUUUU
.....(((..((((.(((((...))))).))))..(((..((((....--------..))))..))-----------).....)))...... ( -11.80)
>DroSim_CAF1 14306 73 - 1
CUUAUGAGUAAUGGCUUUGGAGCCCAAAUCCAUAGUCAAAUGAAUUCU--------UCUUCAAAUG-----------AACCUUCUCUUUUUU
.....(((...(((((.((((.......)))).)))))..((((....--------..))))....-----------......)))...... ( -13.00)
>consensus
CUUAUGAGUAAUGGUUUUGGAGCCCAAAUCCAUAGUCAAAUGAAUUCU________UCUUCAAAUG___________AACCUUCUCUUUUUU
....(((.((.(((.(((((...))))).))))).)))...................................................... ( -9.93 =  -9.93 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 22,529,953 – 22,530,045
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 88.97
Mean single sequence MFE -19.07
Consensus MFE -12.19
Energy contribution -12.30
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -3.01
Structure conservation index 0.64
SVM decision value 0.09
SVM RNA-class probability 0.577456
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22529953 92 - 23771897
AAAUAACAUAAAUUUUGCCUUCUUUUUAAGCUUAUUAUAACUAAUGAGUAAUGGUUUUGGAACCCAAAACCAUAGUCAAACGAAUUCGAAAC
............(((((..(((.......((((((((....)))))))).((((((((((...))))))))))........)))..))))). ( -20.40)
>DroSec_CAF1 13440 87 - 1
AAAUAAAAUUA-UUUGGCCUUCUUUUUAAGCUUAUAAUAACUUAUGAGUAAUGGUUUUGGAGCCCAAAUCCAUAGUCAAAUGAAUUCU----
........(((-((((((...........((((((((....)))))))).((((.(((((...))))).)))).))))))))).....---- ( -21.20)
>DroSim_CAF1 14331 88 - 1
AAAUAACAUUAAUUUUGCCUUCUUUUUAAGCUUAUUAUAACUUAUGAGUAAUGGCUUUGGAGCCCAAAUCCAUAGUCAAAUGAAUUCU----
......((((...................((((((........))))))..(((((.((((.......)))).)))))))))......---- ( -15.60)
>consensus
AAAUAACAUUAAUUUUGCCUUCUUUUUAAGCUUAUUAUAACUUAUGAGUAAUGGUUUUGGAGCCCAAAUCCAUAGUCAAAUGAAUUCU____
...................(((.......((((((((....)))))))).((((.(((((...))))).))))........)))........ (-12.19 = -12.30 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:17 2006