Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,522,731 – 22,522,828 |
Length | 97 |
Max. P | 0.727584 |
Location | 22,522,731 – 22,522,828 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 84.95 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -16.58 |
Energy contribution | -19.02 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.92 |
Structure conservation index | 0.71 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22522731 97 - 23771897 AUACUCCUAGUUGGUGUUUCGCCAAUAGCCUCCUGACCCCCAUUAGGAACCCGGUUGGCUUCGGCCAAUUAUCAUCAGCUAGUUCCAUCAGUUGCCA ......((((((((((..............((((((......))))))....(((((((....)))))))..))))))))))............... ( -29.20) >DroSec_CAF1 6244 97 - 1 AUACUCCUAGUUGGUGUUCCGCCAAUAGCCUCCUGACCCCCAUUAGGAACCCGGUUGGCUUCGGCCAAUUAUCGUCAGCUAGUUCCAUCAGUUGCCA ......(((((((..(..............((((((......))))))....(((((((....)))))))..)..)))))))............... ( -26.60) >DroSim_CAF1 7105 97 - 1 AUACUCCUAGUUGGUGUUCCGCCAAUAGCCUCCUGACCCCCAUUAGGAAACCGGUUGGCUUCGGCCAAUUAUCGUCAGCUAGUUCCAUCAGUUGCCA ......(((((((..(..............((((((......))))))....(((((((....)))))))..)..)))))))............... ( -26.60) >DroEre_CAF1 5276 84 - 1 AUACUCCCAGCU-------------AUACCUCCUGACCCCCAUUAGCAACCCGCUUGGCUACCGCCAAUUAUCAUCAUCAAGGUCCAUCAGCUGCCA .......(((((-------------......(((((.........((.....))(((((....))))).........)).)))......)))))... ( -15.90) >DroYak_CAF1 6655 97 - 1 AUACUCCUGGUUGGUGUUCCGCCAAAAACUUCAUGACCCCCAUUAGCAACCCGGUUGGCUGCCGCCAAUUAUCAUCAUCAAGGUCCAUCAGUUGCCA ........((((((((...)))))..((((....((((..............(((((((....)))))))...........))))....))))))). ( -19.11) >consensus AUACUCCUAGUUGGUGUUCCGCCAAUAGCCUCCUGACCCCCAUUAGGAACCCGGUUGGCUUCGGCCAAUUAUCAUCAGCUAGUUCCAUCAGUUGCCA ......((((((((((..............((((((......))))))....(((((((....)))))))..))))))))))............... (-16.58 = -19.02 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:14 2006