Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,522,303 – 22,522,407 |
Length | 104 |
Max. P | 0.766603 |
Location | 22,522,303 – 22,522,407 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.08 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -14.71 |
Energy contribution | -15.24 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.17 |
Mean z-score | -1.59 |
Structure conservation index | 0.70 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22522303 104 - 23771897 AACUUCCAU-UUUAUUCCUAUUCCGAUUCCG-AAUAGCAUUCCCAUUCCCAUUGCC--AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA .........-.......((((((.......)-)))))..((..(((((((......--..........)))))))..))...((((..((((.....))))..)))). ( -17.39) >DroSec_CAF1 5820 104 - 1 AACUUCCAU-UCCAUUCCUAUUCCGAUACCG-AAUAGCAUUCCCAUUCACACUGCC--AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA .........-.......((((((.......)-))))).........(((((((.((--..........)).)))).)))...((((..((((.....))))..)))). ( -18.60) >DroSim_CAF1 6674 103 - 1 AACUUCCAU-UCCAUUCC-AUUCCGAUUCCG-AAUAGCAUUCCCAUUCCCACUGCC--AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA .........-........-............-..((((((((((............--..........))))))))))....((((..((((.....))))..)))). ( -17.25) >DroEre_CAF1 4873 89 - 1 CAAUUCCAU-UCCAUUCCGAUUCCGAUCCCG-AAUAGCACUCCCAA-----------------UCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACGGAGA .........-..........(((((.....(-((((((((((((..-----------------.....)))))))))....))))...((((.....)))).))))). ( -25.50) >DroYak_CAF1 6239 98 - 1 CAAUCUCAU-UCCAUUCCCAUUCCG-------AACAGCAUUCCCAUUCCCACUGCC--AUCUCUCCAUGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA ...(((((.-...............-------..((((((((((((..........--........))))))))))))..........((((.....))))..))))) ( -23.67) >DroPer_CAF1 26647 102 - 1 CAAUCCCCUGUGCAGUCCCCUGC------CCACACACUCAUGCCAUUCGCAUUGCCACAUCUCUCAACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGCGA (((((((((((((((....))))------..........((((.....))))..............))))))).))))..........((((.....))))....... ( -24.50) >consensus AAAUUCCAU_UCCAUUCCCAUUCCGAU_CCG_AAUAGCAUUCCCAUUCCCACUGCC__AUCUCUCCACGGGGGUGUUGACAAUUCAAACGCAAUAAUUGCGACUGAGA ..................................((((((((((........................))))))))))....((((..((((.....))))..)))). (-14.71 = -15.24 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:13 2006