Locus 8682

Sequence ID 3L_DroMel_CAF1
Location 22,517,771 – 22,517,879
Length 108
Max. P 0.995083
window14230

overview

Window 0

Location 22,517,771 – 22,517,879
Length 108
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 88.23
Mean single sequence MFE -20.63
Consensus MFE -18.52
Energy contribution -17.80
Covariance contribution -0.72
Combinations/Pair 1.17
Mean z-score -2.87
Structure conservation index 0.90
SVM decision value 2.54
SVM RNA-class probability 0.995083
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22517771 108 - 23771897
CUUGUGUUGCUUAAAAUUCAAACAAUGUGUUGAUGCCUUCACACCAACC-AAAACAUGCAUAAUUAAUAUGCAAAGAGCGGCAACAACCA----CUACAACAACAACCACAAU
.(((((((((((.............((.((((.((......)).)))))-).....((((((.....))))))..))))))).))))...----................... ( -20.10)
>DroPse_CAF1 20728 105 - 1
CUUGUGUUGCUUAAAAUUCAAACAAUGUGUUGAUGCCUUCACACCAACCGAAAACAUGCAUAAUUAAUAUGCAAAAAGCGGUAGCAGGCAGCAUCAACAACAACA--------
.(((((((((((..............((((.((.....))))))..((((......((((((.....)))))).....))))...)))))))).)))........-------- ( -24.70)
>DroSec_CAF1 914 108 - 1
CUUGUGUUGCUUAAAAUUCAAACAAUGUGUUGAUGCCUUCACACCAACC-AAAACAUGCAUAAUUAAUAUGCAAAGAGCGGCAACAACCA----CUACAACAACGGCCACAAU
.(((((((((((.............((.((((.((......)).)))))-).....((((((.....))))))..))))))).))))...----................... ( -20.10)
>DroSim_CAF1 1746 108 - 1
CUUGUGUUGCUUAAAAUUCAAACAAUGUGUUGAUGCCUUCACACCAACC-AAAACAUGCAUAAUUAAUAUGCAAAGAGCGGCAACAACCA----CUACAACAACAGCCACAAU
.(((((((((((.............((.((((.((......)).)))))-).....((((((.....))))))..))))))).))))...----................... ( -20.10)
>DroYak_CAF1 1707 108 - 1
CUUGUGUUGCUUAAAAUUCAAACAAUGUGUUGAUGCCUUCACACCAACC-AAAACAUGCAUAAUUAAUAUGCAAAGAGCGGCAACAACCA----CUACAACAAGAACCACAAU
.(((((((((((.............((.((((.((......)).)))))-).....((((((.....))))))..))))))).))))...----................... ( -20.10)
>DroAna_CAF1 30174 94 - 1
UUUGUGUUGCUUAAAAUUCAAACAAUGUGUUGAUGCCUUCACACCAACC-AAAACAUGCAUAAUUAAUAUGCAAAAAGCAGUAGCAA-------------CAGCAGCC-----
.((((((((((..............((.((((.((......)).)))))-).....((((((.....)))))).........)))))-------------)).)))..----- ( -18.70)
>consensus
CUUGUGUUGCUUAAAAUUCAAACAAUGUGUUGAUGCCUUCACACCAACC_AAAACAUGCAUAAUUAAUAUGCAAAGAGCGGCAACAACCA____CUACAACAACAGCCACAAU
.(((((((((((..............((((.((.....))))))............((((((.....))))))..)))))))).))).......................... (-18.52 = -17.80 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:12 2006