Locus 8681

Sequence ID 3L_DroMel_CAF1
Location 22,517,387 – 22,517,482
Length 95
Max. P 0.538183
window14229

overview

Window 9

Location 22,517,387 – 22,517,482
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 76.50
Mean single sequence MFE -15.82
Consensus MFE -8.25
Energy contribution -7.70
Covariance contribution -0.55
Combinations/Pair 1.36
Mean z-score -1.69
Structure conservation index 0.52
SVM decision value 0.01
SVM RNA-class probability 0.538183
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22517387 95 - 23771897
AAAGUGAAAACCUCAAACCUUUGUGAGAU-AACUGCGCAAGUGCUUUAAUUGAAGCAAACCCUCACGGACACACAUACACGC--AGUCACUCACACAC
...((....))..........((((((..-.((((((....((((((....))))))...((....))...........)))--)))..))))))... ( -22.80)
>DroSec_CAF1 529 97 - 1
AAAGUGAAAACCUCAAACCUUUGUGAGCU-AACUGCGAAAAUGCUUUAAUUGAAGCGAACCCUCACAGACACACAGACACGCACAGUCACUCACACAC
...((((............(((((((((.-....)).....((((((....)))))).....)))))))......(((.......)))..)))).... ( -19.40)
>DroSim_CAF1 1362 97 - 1
AAAGUGAAAACCUCAAACCUUUGUGAGCU-AACUGCGAAAAUGCUUUAAUUGAAGCGAACCCUCACAGACACACAGACACGCACAGUCACUCACACAC
...((((............(((((((((.-....)).....((((((....)))))).....)))))))......(((.......)))..)))).... ( -19.40)
>DroYak_CAF1 1352 87 - 1
AAAGUGAAAACCUCAAACCUUUACGAGCU-AACUGCGAAAAUGCUUUAAUUGAAGCGAACCCUCACAAACACAUAGAC----------ACUCACACAC
...((((...................((.-....)).....((((((....)))))).....))))............----------.......... ( -10.70)
>DroAna_CAF1 29750 82 - 1
AAAGUGAAAACCCCAAACCCUUGCAAGUU-GACAACGCAAAUGCUUUAAUUGAAGCGCACCC----AGCCUCACAA----------GUACCCACACA-
...((((.............((((.....-......))))..(((((....)))))......----....))))..----------...........- ( -10.40)
>DroPer_CAF1 20533 90 - 1
AAUGUGAAAGCCCCAAACCUUUCCGAGCAGAGCAGCGAAAAUGCUUUAAUUGAAGCAAACGAAGACAGACAC--AC------ACAGCCACACAUGCCA
.(((((...((...............((......)).....((((((....))))))...............--..------...))..))))).... ( -12.20)
>consensus
AAAGUGAAAACCUCAAACCUUUGCGAGCU_AACUGCGAAAAUGCUUUAAUUGAAGCGAACCCUCACAGACACACAGAC______AGUCACUCACACAC
...(((....................((......)).....((((((....))))))....................................))).. ( -8.25 =  -7.70 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:11 2006