Locus 8679

Sequence ID 3L_DroMel_CAF1
Location 22,508,824 – 22,508,929
Length 105
Max. P 0.791038
window14225

overview

Window 5

Location 22,508,824 – 22,508,929
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 77.50
Mean single sequence MFE -24.55
Consensus MFE -16.52
Energy contribution -17.14
Covariance contribution 0.62
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.67
SVM decision value 0.59
SVM RNA-class probability 0.791038
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22508824 105 + 23771897
CACCACAAACCGCCCACGACCAACCCUCCAUGGGUUCAGUCAACAACAAUUGCAAUUGCAGGUCUCCCAAACAGAGAGCACUGUGCACCGGACCCGGGACAAAAG
...........((((..(((.(((((.....)))))..))).........(((....)))(((((.....((((......)))).....))))).))).)..... ( -27.40)
>DroSec_CAF1 16889 98 + 1
UA-------CCGCCCACGACCAACCCUCCGUGGGUUCAGUCAACAACAAUUGCAAUUGCAGGUCUCCCAAACAGAGAGCACUGAGCACCGGACCCGGGACAAAAG
..-------..(((((((..........)))))))(((((..........(((....)))(.((((.......)))).))))))(..(((....)))..)..... ( -28.10)
>DroSim_CAF1 17312 81 + 1
UA-------CCGCCCACGACCAACCCUCCGUGGGUUCAGUCAACAACAAUUGCAAUUGCAGGUCUCCCAAACAGAAA-----------------CGGGACAAAAG
.(-------(((((((((..........)))))))...............(((....)))))).((((.........-----------------.))))...... ( -19.60)
>DroEre_CAF1 19024 86 + 1
-------------------CCAACCCUCCGUGGGUUCAGUCAACAACAAUUGCAAUUGCAGGUCUCCCCAACGCCGAGCACUGAGCUCCGAACCCGGGACAAAGG
-------------------.......(((.(((((((.............(((....)))(((.........)))((((.....)))).))))))))))...... ( -23.10)
>consensus
UA_______CCGCCCACGACCAACCCUCCGUGGGUUCAGUCAACAACAAUUGCAAUUGCAGGUCUCCCAAACAGAGAGCACUGAGCACCGGACCCGGGACAAAAG
.................(((((((((.....)))))..............(((....)))))))((((.........((.....)).........))))...... (-16.52 = -17.14 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:08 2006