| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,507,440 – 22,507,552 |
| Length | 112 |
| Max. P | 0.740330 |
| Location | 22,507,440 – 22,507,552 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -34.16 |
| Consensus MFE | -15.99 |
| Energy contribution | -16.22 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22507440 112 + 23771897 UACCGGCACUUGGCUACUUUGCUCCUUUUUAUAUAAAUGGCAGCUCAUUAAAUUGCUGG-CAUCGUUUUC-ACCA------GCAGAGGGGUCAAGAGCGCAAAUUGGCCAGGUGUGUUGG ..((((((((((((((.(((((.((.(((.....))).))..((((.......((((((-..........-.)))------)))((....))..))))))))).)))))))))))..))) ( -39.00) >DroVir_CAF1 21732 98 + 1 ---------UUGGCCACUUUGCUGCUUUUUAUAUAAAUGGCAGCUCAUUAAAUUGCUGG-CAUCGUUUCC-GGCU------GUAG-UUGGGG----UCGUAAAUUGGUCAGGUGUUUGCA ---------(((((((.(((((.(((..........(((.((((..........)))).-))).....((-(((.------...)-))))))----).))))).)))))))......... ( -28.40) >DroGri_CAF1 20336 102 + 1 --------UUUGGCCACUUGGCUGCUUUUUAUAUAAAUGGCAACUCAUUAAAUUUCUGGACACCGUUGCCCGACUCUUAGUCGAA-GGGGUC----UCGUAAAUUGGUCAGGUGU----- --------......((((((((((...(((((......((((((....................)))))).(((((((......)-))))))----..))))).)))))))))).----- ( -27.15) >DroSec_CAF1 15504 112 + 1 UACCGGCACUUGGCUACUUUGCUCCUUUUUAUAUAAAUGGCAGCUCAUUAAAUUGCUGG-CAUCGUUUUC-GCCA------GCCGAGGGGUCAAGAGCGUAAAUUGGCCAGGUGUGUUGG ..((((((((((((((.(((((.((.(((.....))).))..((((........(((((-(.........-))))------)).((....))..))))))))).)))))))))))..))) ( -39.30) >DroEre_CAF1 17638 112 + 1 UACCGGCACUUGGCUACUUUGCUCCUUUUUAUAUAAAUGGCAGCUCAUUAAAUUGCUGG-CAUCGUUUUC-GCCA------GCCGAGGGGUCAAAAGCGCAAAUUGGUCAGGUGUGUCGG ..((((((((((((((.(((((..((((.........((((..(((........(((((-(.........-))))------)).)))..)))))))).))))).)))))))))))..))) ( -38.00) >DroMoj_CAF1 28638 98 + 1 ---------UUGGCCACUUUGCUGCUUUUUAUAUAAAUGGCAGCUCAUUAAAUUGCUGC-CAUCGUUUCC-GGCU------GGAG-UAGGCG----UCGUAAAUUGGCCAGGUGUUUGCA ---------(((((((.((((((((((.........((((((((..........)))))-)))...((((-....------))))-.)))))----..))))).)))))))......... ( -33.10) >consensus ________CUUGGCCACUUUGCUCCUUUUUAUAUAAAUGGCAGCUCAUUAAAUUGCUGG_CAUCGUUUCC_GCCA______GCAG_GGGGUC____GCGUAAAUUGGCCAGGUGUGUGGG ........((((((((.(((((............((((((((((..........))))....)))))).....................((.....))))))).))))))))........ (-15.99 = -16.22 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:07 2006