Locus 8677

Sequence ID 3L_DroMel_CAF1
Location 22,507,166 – 22,507,270
Length 104
Max. P 0.925821
window14223

overview

Window 3

Location 22,507,166 – 22,507,270
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 99.49
Mean single sequence MFE -17.70
Consensus MFE -17.43
Energy contribution -17.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.05
Structure conservation index 0.98
SVM decision value 1.17
SVM RNA-class probability 0.925821
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22507166 104 - 23771897
AGCAGCUGGCCAUAAAAAUGGCUUAAAAUGAUCAUCAUAAACGUUGAGUGAGCAAAUAUUGCAAUAAAAGUAAAUGACUGAAGGACGUCGUAAAAUAUUUAUAC
.((((..((((((....)))))).....((.((((((.......))).))).))....)))).(((((.((..(((((........)))))...)).))))).. ( -17.40)
>DroVir_CAF1 21423 104 - 1
AGCAGUUGGCCAUAAAAAUGGCUUAAAAUGAUCAUCAUAAACGUUGAGUGAGCAAAUAUUGCAAUAAAAGUAAAUGACUGAAGGACGUCGUAAAAUAUUUAUAC
.(((((.((((((....)))))).....((.((((((.......))).))).))...))))).(((((.((..(((((........)))))...)).))))).. ( -18.30)
>DroGri_CAF1 19985 104 - 1
AGCAGCUGGCCAUAAAAAUGGCUUAAAAUGAUCAUCAUAAACGUUGAGUGAGCAAAUAUUGCAAUAAAAGUAAAUGACUGAAGGACGUCGUAAAAUAUUUAUAC
.((((..((((((....)))))).....((.((((((.......))).))).))....)))).(((((.((..(((((........)))))...)).))))).. ( -17.40)
>DroSec_CAF1 15222 104 - 1
AGCAGCUGGCCAUAAAAAUGGCUUAAAAUGAUCAUCAUAAACGUUGAGUGAGCAAAUAUUGCAAUAAAAGUAAAUGACUGAAGGACGUCGUAAAAUAUUUAUAC
.((((..((((((....)))))).....((.((((((.......))).))).))....)))).(((((.((..(((((........)))))...)).))))).. ( -17.40)
>DroSim_CAF1 15574 104 - 1
AGCAGCUGGCCAUAAAAAUGGCUUAAAAUGAUCAUCAUAAACGUUGAGUGAGCAAAUAUUGCAAUAAAAGUAAAUGACUGAAGGACGUCGUAAAAUAUUUAUAC
.((((..((((((....)))))).....((.((((((.......))).))).))....)))).(((((.((..(((((........)))))...)).))))).. ( -17.40)
>DroMoj_CAF1 28322 104 - 1
AGCAGUUGGCCAUAAAAAUGGCUUAAAAUGAUCAUCAUAAACGUUGAGUGAGCAAAUAUUGCAAUAAAAGUAAAUGACUGAAGGACGUCGUAAAAUAUUUAUAC
.(((((.((((((....)))))).....((.((((((.......))).))).))...))))).(((((.((..(((((........)))))...)).))))).. ( -18.30)
>consensus
AGCAGCUGGCCAUAAAAAUGGCUUAAAAUGAUCAUCAUAAACGUUGAGUGAGCAAAUAUUGCAAUAAAAGUAAAUGACUGAAGGACGUCGUAAAAUAUUUAUAC
.((((..((((((....)))))).....((.((((((.......))).))).))....)))).(((((.((..(((((........)))))...)).))))).. (-17.43 = -17.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:06 2006