Locus 8675

Sequence ID 3L_DroMel_CAF1
Location 22,505,872 – 22,505,972
Length 100
Max. P 0.643880
window14218

overview

Window 8

Location 22,505,872 – 22,505,972
Length 100
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 69.66
Mean single sequence MFE -38.56
Consensus MFE -11.22
Energy contribution -14.00
Covariance contribution 2.78
Combinations/Pair 1.16
Mean z-score -1.81
Structure conservation index 0.29
SVM decision value 0.23
SVM RNA-class probability 0.643880
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22505872 100 + 23771897
CGACUGCGGCG-----UCUGCAUCGCAGCAGCCAUUAAUGAGAUUCAGUC---CGGAGU-CCUGCGGA--GCAGACCUCUGC--------AGGAGAUUCCAUCCUCCCUCCGAGGAGCU
.(((((.(((.-----.((((...))))..)))(((.....))).)))))---.(((((-((((((((--(.....))))))--------))))..)))).(((((.....)))))... ( -39.40)
>DroGri_CAF1 18696 115 + 1
CGACGCUGACUUGGGCUCUGU-UGACAGCAGCCUUUAAUGAGCAACAGCAUUUGUAAAUCCCUUCGGCUUGUAACACUCAGUUUACGGUUAG-GGG-UCCAA-CUAUCAGCGGAGAGCU
(..((((((.((((((.((((-((....((........))..))))))...........((((..((((.((((........))))))))))-)))-)))))-...))))))..).... ( -32.70)
>DroSec_CAF1 13935 99 + 1
CGACUGCGGCG-----UAUGCGUCGCAGCAGCCAUUAAUGAGCAUCAGUC---GGGAGU-CCUGCGGA--GCAGCCCUCUGC--------AG-AGAUUCCAUCCUCCCUCCGAGGAGCU
(((((((((((-----....))))))....((((....)).))...))))---)(((((-((((((((--(.....))))))--------))-.)))))).(((((.....)))))... ( -46.50)
>DroSim_CAF1 14287 99 + 1
CGACUGCGGCG-----UCUGCGUCGCAGCAGCCAUUAAUGAGCAUCAGUC---GGGAGU-CCUGCGGA--GCAGCCCUCUGC--------AG-AGAUUCCAUCCUCCCUCCGAGGAGCU
(((((((((((-----....))))))....((((....)).))...))))---)(((((-((((((((--(.....))))))--------))-.)))))).(((((.....)))))... ( -46.50)
>DroEre_CAF1 16071 77 + 1
CGACGGCGGCG-----UCUGCGUCGCAGCAGCCAUUAAUGAGCAUCAGUC---CGGAGU-CCUGCG-A--GCAGCGCUCUGU--------A----------------------GGAGCU
.(((.((((((-----....))))))....((((....)).))....)))---.....(-((((((-(--((...)))).))--------)----------------------)))... ( -27.70)
>consensus
CGACUGCGGCG_____UCUGCGUCGCAGCAGCCAUUAAUGAGCAUCAGUC___GGGAGU_CCUGCGGA__GCAGCCCUCUGC________AG_AGAUUCCAUCCUCCCUCCGAGGAGCU
.(.((((((((.........)))))))))(((......................((((...((((.....))))..)))).....................(((((.....)))))))) (-11.22 = -14.00 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:01 2006