| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,504,439 – 22,504,538 |
| Length | 99 |
| Max. P | 0.528933 |
| Location | 22,504,439 – 22,504,538 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.71 |
| Mean single sequence MFE | -26.07 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22504439 99 - 23771897 GCGCGAUUAUUUGCCGAAAUUCGAAUUAAUAAACAAACUGAAUAGGGCUUUUCAUGCUAAGAAGGGCUGU--------GAAUUAACGUGAGUGCAGUGCAAAUAAUA .....((((((((((...(((((..(((((..((...((....))((((((((.......))))))))))--------..)))))..)))))...).))))))))). ( -24.30) >DroSim_CAF1 12875 99 - 1 GCGCGAUUAUUUGCCGAAAUUCGAAUUAAUAAACAAACUGAAUAGGGCUUUUCAUGCUAAGAAGGGCUGU--------AAAUUCACGUGAGUGCAGUGCAAAUAAUA .....(((((((((((.....)).............((((..((.((((((((.......)))))))).)--------)....(((....)))))))))))))))). ( -26.70) >DroEre_CAF1 14774 104 - 1 GUGCGAUUAUUUGCCGAAAUUCGAAUUAGUAAACAAACAGCACAAGACUUUUAGUGCUGGGAAGGACUGUACGAGUGUAAAU--GCGUGAGUGCA-UGCAAAUAAUA .....(((((((((....(((((...((((.......((((((..........))))))......))))..)))))....((--(((....))))-)))))))))). ( -27.22) >consensus GCGCGAUUAUUUGCCGAAAUUCGAAUUAAUAAACAAACUGAAUAGGGCUUUUCAUGCUAAGAAGGGCUGU________AAAUU_ACGUGAGUGCAGUGCAAAUAAUA .....(((((((((((.....)).............((((....((.(((((........))))).))................((....)).))))))))))))). (-15.47 = -15.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:56 2006