Locus 8671

Sequence ID 3L_DroMel_CAF1
Location 22,503,793 – 22,503,906
Length 113
Max. P 0.876928
window14211

overview

Window 1

Location 22,503,793 – 22,503,906
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.27
Mean single sequence MFE -44.90
Consensus MFE -34.39
Energy contribution -34.20
Covariance contribution -0.19
Combinations/Pair 1.15
Mean z-score -2.20
Structure conservation index 0.77
SVM decision value 0.90
SVM RNA-class probability 0.876928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22503793 113 - 23771897
CUGGAGAACGAGAGAAAACACCAGGAACUGGAUAGGAAGCCUGGUACUUGGCUCUG-------GUCUCAGUCCUGGUCGGGUGGCAAUGGGUUUCCUGGCAGUGGAUUCUCUGGGAUGCU
........(.((((((..((((((((.((((((.(((.(((........)))))).-------))).))))))))((((((..((.....))..)))))).)))..)))))).)...... ( -45.60)
>DroSec_CAF1 12147 113 - 1
CUGGAGAACGAAAGAAAACAUACGGAACAGGAUGGGAAGCCUGGUACUUGGCUCUG-------GUCUGAGUCCUGGCCGGGUGGCAAUGGGUUUCCUGGCGGUGGAUUCUCUAGGAUGCC
(((((((((....)....(((..(((...((((.(((.(((........)))))).-------))))...)))..((((((..((.....))..)))))).)))..))))))))...... ( -44.10)
>DroSim_CAF1 12251 113 - 1
CUGGAGAACGAAAGAAAACAUCCGGAGCAGGAUGGGAAGCCUGGUACUUGGCUCUG-------GUCUGAGUCCUGGCCGGGUGGCAAUGGGUUUCCUGGCGGUGGAUUCUCUAGGAUGCU
(((((((((....)......((((..((.....((((((((((.(((((((((..(-------(.......)).))))))))).)...))))))))).))..))))))))))))...... ( -45.50)
>DroEre_CAF1 14135 120 - 1
CUGGAGAACGAAAGAAAACAUCCGGAACAGCAUGGGAAGCCUGGUACUUGGCUCUGGUCUCUGGUCUCAGUACUGGUCGGGUGGCAAUGGGUUUCUUGGCACUGGAUUCUCCAGGAUGCU
(((((((((....)......(((((....((.(((((((((((.(((((((((..(((..(((....))).)))))))))))).)...)))))))))))).)))))))))))))...... ( -44.40)
>consensus
CUGGAGAACGAAAGAAAACAUCCGGAACAGGAUGGGAAGCCUGGUACUUGGCUCUG_______GUCUCAGUCCUGGCCGGGUGGCAAUGGGUUUCCUGGCAGUGGAUUCUCUAGGAUGCU
(((((((((....)....(((......((((((.(((((((........))))...........)))..))))))((((((..((.....))..)))))).)))..))))))))...... (-34.39 = -34.20 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:55 2006