Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,502,460 – 22,502,561 |
Length | 101 |
Max. P | 0.536146 |
Location | 22,502,460 – 22,502,561 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 96.53 |
Mean single sequence MFE | -11.85 |
Consensus MFE | -10.45 |
Energy contribution | -10.45 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.88 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22502460 101 + 23771897 CCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUUUUGUUUCUUAACAUUUUUAU .......(((.(((.....(((((....)))))..(((((..(........)..))))).......................))).)))............ ( -11.10) >DroSec_CAF1 10852 101 + 1 CCCACACAGAAACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUCUUGUUUCUUAACAUUUUUAU .......(((((((.....(((((....)))))..(((((..(........)..))))).......................)))))))............ ( -14.40) >DroSim_CAF1 10911 101 + 1 UCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUUUGGUUUCUUAACAUUUUUAU .(((...(((.........(((((....)))))..(((((..(........)..))))).................)))..)))................. ( -10.80) >DroEre_CAF1 12814 100 + 1 CCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUC-UUAUUUAUUUUUCCUCUUUUUGUUUCUUAACAUUUUUAU .......(((.(((.....(((((....)))))..(((((..(........)..)))))..-....................))).)))............ ( -11.10) >consensus CCCACACAGAUACACGCAUGUAAAUCCUUUUGCCUGCCAGCUGCGCUUCUUCUCCUGGCUUUUUAUUUAUUUCUCCUCUUUUUGUUUCUUAACAUUUUUAU .......(((.((......(((((....)))))..(((((..(........)..)))))........................)).)))............ (-10.45 = -10.45 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:54 2006