Locus 867

Sequence ID	3L_DroMel_CAF1
Location	2,610,590 – 2,610,680
Length	90
Max. P	0.609176

overview

Window 2

Location	2,610,590 – 2,610,680
Length	90
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	91.48
Mean single sequence MFE	-16.23
Consensus MFE	-12.72
Energy contribution	-13.52
Covariance contribution	0.80
Combinations/Pair	1.09
Mean z-score	-1.52
Structure conservation index	0.78
SVM decision value	0.15
SVM RNA-class probability	0.609176
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2610590 90 + 23771897
CACAA----ACAUGCACUUGUUUUGGGUGGAGAACAAGAGCAACUUUUAGACACAUGCAGUAAUAAAUGAAACAAAUUAAUUAAAAGUGUGCAA
.....----...(((.((((((((......)))))))).))).......(.(((((....((((.(((.......))).))))...)))))).. ( -17.60)
>DroSec_CAF1 8799 90 + 1
CACAA----ACAUGCACUUGUUUGGGGUGGAGAACAAGAGCAACUUUUAGACACAUGCAGUAAUAAAUGAAACAAAUUAAUUAAAAGUGUGCAA
.....----...(((.(((((((........))))))).))).......(.(((((....((((.(((.......))).))))...)))))).. ( -16.90)
>DroSim_CAF1 11469 90 + 1
CACAA----ACAUGCACUUGUUUGGGGUGGAGAACAAGAGCAACUUUUAGACACAUGCAGUAAUAAAUGAAACAAAUUAAUUAAAAGUGUGCAA
.....----...(((.(((((((........))))))).))).......(.(((((....((((.(((.......))).))))...)))))).. ( -16.90)
>DroEre_CAF1 8951 94 + 1
CACAAGUGCACAAGUGCAUGACUAUGGGGGAAAACAAGAGCAACUUUUAGACACAUGCUGUAAUAAAUGAAACAAAUUAAUUAAAAGUGUGCAA
.....(..(((....(((((.(((..((...............))..)))...)))))..((((.(((.......))).))))...)))..).. ( -15.46)
>DroYak_CAF1 12210 88 + 1
CACAA----ACAUGCGCUUG--UAUGGGGGAAAACAAGAGCAACUUUUAGACACAUGCAGUAAUAAAUGAAACAAAUUAAUUAAAAGUGUGCAA
.....----...(((.((((--(.(......).))))).))).......(.(((((....((((.(((.......))).))))...)))))).. ( -14.30)
>consensus
CACAA____ACAUGCACUUGUUUAGGGUGGAGAACAAGAGCAACUUUUAGACACAUGCAGUAAUAAAUGAAACAAAUUAAUUAAAAGUGUGCAA
............(((.(((((((........))))))).))).......(.(((((....((((.(((.......))).))))...)))))).. (-12.72 = -13.52 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:07 2006