Locus 8665

Sequence ID 3L_DroMel_CAF1
Location 22,479,121 – 22,479,229
Length 108
Max. P 0.694770
window14200

overview

Window 0

Location 22,479,121 – 22,479,229
Length 108
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 83.03
Mean single sequence MFE -27.00
Consensus MFE -22.76
Energy contribution -24.20
Covariance contribution 1.44
Combinations/Pair 1.11
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.34
SVM RNA-class probability 0.694770
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22479121 108 - 23771897
AACCACUGUCGCAUGGGCAGUGAAAAGAUGGGCUCCUUGUUGAUACAGAUCACUAGGUUAUCAUCACCAAAUGUAUCUCA-----GGGCCACACACACAACGAGCAUCAAACA---
...(((((((.....)))))))....(((((((.(((.(..((((((........(((.......)))...)))))).))-----))))).....(.....)..)))).....--- ( -26.30)
>DroSec_CAF1 29230 106 - 1
AACCAUUGUCGCAUUGGCAGUGGCAAAAUGGGCUCCUUGUUGAUACAGAUCAGUAGGUUAUCAUAACCAAAAGUAUCUCA-----GAGCCACA--CACAAGGAGCAUCAAUCA---
..((((((((.....)))))))).....((((((((((((((.(((......)))(((((...)))))............-----......))--.))))))))).)))....--- ( -30.70)
>DroSim_CAF1 29281 106 - 1
AACCAUUGUCGCAUUGGCAGUGAGAAAAUGGGCUCCUUGUUGAUACAGAUCAGUAGGUUAUCAUAACCAAAAGUAUCUCA-----GAGCCACA--CACAAGGAGCAUCAAUCA---
..(((((.((.(((.....))).)).)))))(((((((((((.(((......)))(((((...)))))............-----......))--.)))))))))........--- ( -28.50)
>DroEre_CAF1 33541 107 - 1
GACCAUUGUCGUAUAGGCUGUG--AAAAUGGGCUC--UGUUGAUACGGAUCUGUAGGUUAUC---ACCAAAAAUAUCUCAGUUGAGAGCCACA--CACCACGAGCACCAAAAAGUG
(((....)))......((((((--......(((((--(.((((((((....))))(((....---))).........))))...))))))...--...))).)))........... ( -22.50)
>consensus
AACCAUUGUCGCAUUGGCAGUGA_AAAAUGGGCUCCUUGUUGAUACAGAUCAGUAGGUUAUCAUAACCAAAAGUAUCUCA_____GAGCCACA__CACAACGAGCAUCAAACA___
...(((((((.....)))))))......((((((((((((...............((((.....))))....((..(((......)))..))....))))))))).)))....... (-22.76 = -24.20 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:45 2006