Locus 8664

Sequence ID	3L_DroMel_CAF1
Location	22,477,618 – 22,477,727
Length	109
Max. P	0.564508

overview

Window 9

Location	22,477,618 – 22,477,727
Length	109
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	83.75
Mean single sequence MFE	-23.78
Consensus MFE	-18.85
Energy contribution	-19.48
Covariance contribution	0.62
Combinations/Pair	1.09
Mean z-score	-1.49
Structure conservation index	0.79
SVM decision value	0.06
SVM RNA-class probability	0.564508
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22477618 109 + 23771897
UUGCGGCGACCAAAUUGUAGUUAAGUUCAAGUGGACACUCAAGCUGGGUUCCA-AGAGGAAGAAAG---AAGAUGUAAGAAAAUGUGAUAUGGGUGUUGCAUGAUUAAAGGGG-
.(((((((.(((.((..((.....((((....))))((((...((...((((.-...))))...))---..)).)).......))..)).))).)))))))............- ( -22.40)
>DroSec_CAF1 27585 109 + 1
AUGCGG---CCAAAUUGUAGUUAAGUUCAAGUGGACACCC-AGCUGGGAUCCAAAGGGGAAGAAAGAAGAAGAUUUAAGAAAAUGUGAUAUGGCUGUUGCAUGAUUAAAGGGG-
..((((---(((.((..((.....((((....)))).(((-...(((...)))...)))........................))..)).)))))))................- ( -22.90)
>DroSim_CAF1 27637 112 + 1
AUGCGGCGACCAAAUUGUAGUUAAGUUCAAGUGGACACCCAAGCUGGGAUCCG-AGUGGAAGAAAGAAGAAGAUUUAAGAAAAUGUGAUAUGGGUGUUGCAUGAUUAAAGGGG-
((((((((.(((.((..((......((((..((((..(((.....))).))))-..)))).....(((.....))).......))..)).))).))))))))...........- ( -26.10)
>DroEre_CAF1 32024 98 + 1
AUGCGGCGACCAAAUUGUAGUUAAGUUCAAGUGGACACCCAAGCUGGGAUCCAAAGGAAAA----------------GGAAGAUGUGAUAUGGGUAUUGCGUGAUUAAAGGGGA
((((((...(((.((..((.((...(((...((((..(((.....))).))))...)))..----------------.))...))..)).)))...))))))............ ( -23.70)
>consensus
AUGCGGCGACCAAAUUGUAGUUAAGUUCAAGUGGACACCCAAGCUGGGAUCCA_AGGGGAAGAAAG___AAGAUUUAAGAAAAUGUGAUAUGGGUGUUGCAUGAUUAAAGGGG_
((((((((.(((.((..((.....((((....)))).(((.....)))...................................))..)).))).))))))))............ (-18.85 = -19.48 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:44 2006