Locus 8660

Sequence ID 3L_DroMel_CAF1
Location 22,471,481 – 22,471,575
Length 94
Max. P 0.989688
window14188

overview

Window 8

Location 22,471,481 – 22,471,575
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 72.52
Mean single sequence MFE -21.14
Consensus MFE -7.65
Energy contribution -8.57
Covariance contribution 0.92
Combinations/Pair 1.31
Mean z-score -2.35
Structure conservation index 0.36
SVM decision value 2.18
SVM RNA-class probability 0.989688
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22471481 94 + 23771897
UCAGAUAUACAGAUGUACCAUACAUACCGACA-GUUUGGUAUAUCUGUAUAUUUAAGUUCAUGAA-AAAAGCAGAUAGAUGGAUCAUUCGGGCAGA
..((((((((((((((((((.((.........-)).))))))))))))))))))..((((.....-.....((......))((....))))))... ( -26.90)
>DroSec_CAF1 21644 76 + 1
UCAG--------------------UGCCGGUAUGUGUGGGAUAUCUGUAUAUUUAUGUUCAUGAAAAAAAGCAGAUAGAUGGAUCAUUCGGGCAGA
....--------------------((((.(.(((..(.(..(((((((...(((((....))))).....)))))))..).)..))).).)))).. ( -17.90)
>DroSim_CAF1 21629 76 + 1
UCCC--------------------UGCCGGUAUGUAUGGGAUACCUGCCUAUUUAUGUUCCUGAACAAAACCCGACAGAUGGAUCAUUCGGGCAGA
((((--------------------(((......))).))))...((((((....(((.(((...................))).)))..)))))). ( -19.71)
>DroEre_CAF1 25338 75 + 1
UCCA--------------------UGCCGGUAAGUUUGGUAUAUCUGUGCAAUUGUGUUCAUAAA-AAAAGCAGAUAGAUAGAUCAUUCUGGCAGA
....--------------------((((((...(((((...(((((((....((((....)))).-....)))))))..)))))....)))))).. ( -20.20)
>DroYak_CAF1 27203 74 + 1
UCGU--------------------AGCCGGUAAGUAUGGUACAUCUGUUUAGUUAUGUUCAUAAA--ACAGUAGAUAGAUGGAUCAUUUUGGCAGA
....--------------------.(((((.....(((((.((((((((((....((((.....)--))).)))))))))).))))).)))))... ( -21.00)
>consensus
UCAG____________________UGCCGGUAAGUAUGGUAUAUCUGUAUAUUUAUGUUCAUGAA_AAAAGCAGAUAGAUGGAUCAUUCGGGCAGA
.........................(((.(.....(((((.(((((((..........................))))))).))))).).)))... ( -7.65 =  -8.57 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:34 2006