Locus 8657

Sequence ID 3L_DroMel_CAF1
Location 22,462,842 – 22,462,940
Length 98
Max. P 0.575468
window14185

overview

Window 5

Location 22,462,842 – 22,462,940
Length 98
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 83.17
Mean single sequence MFE -29.70
Consensus MFE -21.43
Energy contribution -22.27
Covariance contribution 0.84
Combinations/Pair 1.30
Mean z-score -1.67
Structure conservation index 0.72
SVM decision value 0.08
SVM RNA-class probability 0.575468
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22462842 98 + 23771897
CAGACAGCGACAAGAGAAAUCGAAUCUGUCUGGACAGGCGUUUAAUGAGACGUUGAAUUGCCGGAGUAGUCCGGUGAUGAGCU---------AGAUAUGUGUCACGG
(((((((......((....))....)))))))(((((((((((....)))))))..((..(((((....)))))..)).....---------.......)))).... ( -32.60)
>DroSec_CAF1 14643 98 + 1
CAGGCAGCGACAAGUGAAAUCGAAUCUGUCUGGACAGGCGUUUAAUGAGACGUUCAAUUGCCGGAGUAGUCCGGUGAUGAGCU---------GGAUAUGUGUCAGGG
((((((((((.........)))...)))))))((((.(.((((....))))(((((.(..(((((....)))))..)))))).---------.....).)))).... ( -30.90)
>DroSim_CAF1 14456 98 + 1
CAGACAGCGACAAGUGAAAUCGAAUCUGUCUGGACAGGCGUUUAAUGAGACGUUCAAUUGCCGGAGUAGUCCGGUGAUGAGCU---------GGAUAUGUGUCAGGG
((((((((((.........)))...)))))))((((.(.((((....))))(((((.(..(((((....)))))..)))))).---------.....).)))).... ( -31.50)
>DroEre_CAF1 18755 98 + 1
CAGACAGCGACAAGUGAAAUCGAAUCUGUCUGGACAGGCGUUUAAUGAGACGUUGGAUUGCCGGAAUGGUCUGGUGAUGAGCU---------GGAUAUGUGUCAGGG
((((((((((.........)))...)))))))(((((((((((((((...))))))).))))......(((..((.....)).---------.)))...)))).... ( -28.60)
>DroYak_CAF1 19785 98 + 1
CAUACAGCGACAAGUGAAAUCGAAUCUGUCUGGACAGGCGUUUAAUGAGACGUUGGAUUGCCGGAAUAGUCCGGUGAUGAGCU---------GGAUAUGUGUCAGAG
....((((((((..(........)..))))....(..((((((....))))))..)((..(((((....)))))..))..)))---------)(((....))).... ( -27.80)
>DroPer_CAF1 30016 105 + 1
UGGACAGCGACAAGUGGAAACGAAUCUGCUCGGACAACAAUUUAAUGAAACGUUAAAUUGCUGACCAAGUCCCAAAGAGAGACAGUCCUAAAGGAU--GUGUGUGGG
.((((((((.....((....))....)))).((.((.((((((((((...)))))))))).)).))..)))).......(.(((((((....))))--.))).)... ( -26.80)
>consensus
CAGACAGCGACAAGUGAAAUCGAAUCUGUCUGGACAGGCGUUUAAUGAGACGUUGAAUUGCCGGAGUAGUCCGGUGAUGAGCU_________GGAUAUGUGUCAGGG
((((((((((.........)))...)))))))(((((((((((....)))))))..(((((((((....))))))))).....................)))).... (-21.43 = -22.27 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:31 2006