Locus 8656

Sequence ID 3L_DroMel_CAF1
Location 22,462,350 – 22,462,454
Length 104
Max. P 0.644096
window14184

overview

Window 4

Location 22,462,350 – 22,462,454
Length 104
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 75.55
Mean single sequence MFE -31.87
Consensus MFE -17.33
Energy contribution -18.72
Covariance contribution 1.39
Combinations/Pair 1.14
Mean z-score -1.65
Structure conservation index 0.54
SVM decision value 0.23
SVM RNA-class probability 0.644096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22462350 104 - 23771897
CGGGAGACGGCAAGUGCGGAGAGUAGAUAAAAUUGGCGAACGACCCGAAGCAAUUUUCCGGUUUCGAUGUCGGCAUUGACAUUGUCAUCGUAU--------CUCCGUCUCCC-
.(((((((((.(..((((((((((.(......((((........))))..).)))))))(((..((((((((....))))))))..)))))).--------.))))))))))- ( -38.80)
>DroGri_CAF1 8121 88 - 1
--------------UGGG-GUCGCU--UAUAAAUUGCCAAAGACCCGCAGCAAUUUUCCGGUUUCAAUGUCGCCAUUGACAUUGUCAUCGUCU--------CCACACGGCCCC
--------------.(((-((((..--...(((((((............)))))))..((((..((((((((....))))))))..))))...--------.....))))))) ( -27.90)
>DroSec_CAF1 14135 104 - 1
CGGGAGACGACAAGUGCGGAGAGCAGAUAAAAUUGGCGAAGGACCCGCAGCAAUUUUCCGGUUUCGAUGUCGGCAUUGACAUUGUCAUCGUAU--------CUCCGUCUCCC-
.((((((((.(....))(((((......((((((((((.......)))..))))))).((((..((((((((....))))))))..))))..)--------)))))))))))- ( -36.00)
>DroEre_CAF1 18194 97 - 1
---------------GCGGGGAGCAUAUAAAAUUGGCGAAGGACCCGCAGCAAUUUUCCGGUUUCGAUGUCGGCAUUGACAUUGUCAUCGUAUCUCAGUAUCUCCGUCUCCC-
---------------(((((((((....((((((((((.......)))..))))))).((((..((((((((....))))))))..)))).......)).))))))).....- ( -27.00)
>DroYak_CAF1 19267 104 - 1
CGGAAGACGGCAAGUGCGGUGAGCAGAUAAAAUUGGCGAUGGACCCGCAGCAAUUUUCCGGUUUCGAUGUCGGCAUUGACAUUGUCAUCGUAU--------CUCCGUCUCCC-
.(((.(((((.(..((((((((......((((((((((.......)))..))))))).((((.((((((....)))))).)))))))))))).--------.))))))))).- ( -35.60)
>DroAna_CAF1 12968 97 - 1
UGUGGAUCUGCAAAUGCGGGGAAUAGAUAAAAUUGGCAAAAUACCCGCAGCAAUUUUCCGGUUUCAAUGUCGGCAUUGACAUUGUCAUCGUCG--------CUCC--------
.((((...(((...((((((.......................)))))))))......((((..((((((((....))))))))..)))))))--------)...-------- ( -25.90)
>consensus
CGGGAGACGGCAAGUGCGGGGAGCAGAUAAAAUUGGCGAAGGACCCGCAGCAAUUUUCCGGUUUCGAUGUCGGCAUUGACAUUGUCAUCGUAU________CUCCGUCUCCC_
...............((((((.......((((((((((.......)))..))))))).((((..((((((((....))))))))..))))...........))))))...... (-17.33 = -18.72 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:30 2006