| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,461,974 – 22,462,066 |
| Length | 92 |
| Max. P | 0.806760 |
| Location | 22,461,974 – 22,462,066 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.22 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -17.43 |
| Energy contribution | -17.13 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22461974 92 - 23771897 ---------GGGAGAAUGGGGCUGACGUUGAUGAUUUUUUAUUGCUCGAGUUUUAAUUUUACACUUGAGUUGAGACCGAC-GCCCUUCCA-GGCC---UUGGAAAA ---------(((.....(((((.......(((((....)))))..(((.((((((((((.......))))))))))))).-)))))....-..))---)....... ( -22.50) >DroSec_CAF1 13767 92 - 1 ---------GGGAGAAUGGGGCUGACGUUGAUGAUUUUUCAUUGCUCGAGUUUUAAUUUUACACUUGAGUUGAGACCGAG-GCCCCUCCA-GCCC---UUCGAAAA ---------(((.....(((((.......(((((....))))).((((.((((((((((.......))))))))))))))-)))))....-.)))---........ ( -33.20) >DroEre_CAF1 17842 80 - 1 ---------GGGAGAAUGGGGCUGACGUUGAUGAUUUUUCAUUGCUCGAGUUUUAAUUUUACACUUGAGUUGAGACCAAC-GCCCCUCCA---------------- ---------.(((....(((((...((..(((((....)))))...)).((((((((((.......))))))))))....-)))))))).---------------- ( -24.10) >DroYak_CAF1 18901 92 - 1 ---------GAGAGAAUGGGGCUGACGUUGAUGAUUUUUCAUUGCUCGAGUUUUAAUUUUACACUUGAGUUGAGACCAAC-GCCCCUCCA-GCCC---UACGAAAA ---------.......((((((((.(((((((((....)))).((((((((...........))))))))......))))-)......))-))))---))...... ( -25.70) >DroMoj_CAF1 52943 101 - 1 -UGAAUGAAGUGUGUGUGGGGCUGACGUUGAUGAUUUUUCAUUGCUUGCGUUUUAAUUUUACACUUGAGUUGAGUCUGGGGGCACCACG-AAAGC---GGCGACAA -....(.(((((((.........(((((.(((((....)))))....))))).......))))))).)((((.(((....))).((.(.-...).---)))))).. ( -24.09) >DroPer_CAF1 28459 99 - 1 GC-----GAGGGAGUGUGUGGGUGACGUUGAUGAUUUUUCAUUGCUCGAGUUUUAAUUUUACACUUGAGUUGCGUCCGAC-GCCGCACCU-CCUCCGCCUCCGCCU ((-----(..((((.(((((((((((((.(((((....)))))((((((((...........)))))))).)))))..))-.))))))))-))..)))........ ( -40.20) >consensus _________GGGAGAAUGGGGCUGACGUUGAUGAUUUUUCAUUGCUCGAGUUUUAAUUUUACACUUGAGUUGAGACCGAC_GCCCCUCCA_GCCC___UUCGAAAA ..........(((....(((((.......(((((....)))))((((((((...........))))))))...........))))))))................. (-17.43 = -17.13 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:29 2006