Locus 8654

Sequence ID 3L_DroMel_CAF1
Location 22,457,863 – 22,457,973
Length 110
Max. P 0.648844
window14182

overview

Window 2

Location 22,457,863 – 22,457,973
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.67
Mean single sequence MFE -38.75
Consensus MFE -23.18
Energy contribution -24.05
Covariance contribution 0.87
Combinations/Pair 1.38
Mean z-score -1.86
Structure conservation index 0.60
SVM decision value 0.24
SVM RNA-class probability 0.648844
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22457863 110 - 23771897
UCAGCAAGUGUGGAAGUAUUAUGUGAGGUUCAUGGAGCUGCCCUGAUUGCUACGACUGCUCCGUGGAGUUAUUUGUGGGAAUGGCUCCGACUCCUUGGCACUUCGCAUAA
((.((....)).))....((((((((((((((.(((((.(((...(((.((((((..((((....))))...)))))).))))))...).)))).))).))))))))))) ( -37.40)
>DroGri_CAF1 1661 101 - 1
GGGGCUGGUGUGGAGU--UUAUGUUA--UUUGUGGGGCGGCUG---UUGGAGUCACUCUUCC-AGUUGCUGCUGGCA-GGAUGCCUGCGGCCUGCUGGCACUUCACAUAA
.......(((((((((--........--.......((((((((---..((((...))))..)-)))))))((..(((-((.((....)).)))))..))))))))))).. ( -43.70)
>DroSec_CAF1 9598 110 - 1
GCAGCAAGUGUGGAAGUAUUAUGUGAGGUUCAUGGUGCUGCCCUGAUUGCUACGACUGCUCCGUGGAGUUAUUUGUGGGAAUGGCUCCGACUCUUUGGCACUUCGCAUAA
...((((((((.(((((((((((.......)))))))))(((...(((.((((((..((((....))))...)))))).)))))).........)).)))))).)).... ( -35.30)
>DroSim_CAF1 9384 110 - 1
GCAGCAAGUGUGGAAGUAUUAUGUGAGGUUCAUGGUGCUGCCCUGAUUGCUACGACUGCUCCGUGGAGUUAUUUGUGGGAAUGGCUCCGACUCUUUGGCACUUCGCAUAA
...((((((((.(((((((((((.......)))))))))(((...(((.((((((..((((....))))...)))))).)))))).........)).)))))).)).... ( -35.30)
>DroEre_CAF1 13700 110 - 1
GCAGUAAGUGCGGCAGUACUAUGUGAGGUUCAUGGUGCUGCCCUGAUUGCCUCGACUGCUCCGUGGAGUUAUUUGUGGAAAUGGCUCCGACUGUUUGGCACUUCGCAUAA
.......((((((((((((((((.......))))))))))))..((.((((..(((.......(((((((((((....)))))))))))...))).))))..)))))).. ( -43.30)
>DroYak_CAF1 14821 109 - 1
GCAGC-AGUCUGGAAGUAUUAUGUGAGGUUCAUGGUGCUGCCCUGAUUGCCGCGACUUCUCCGUGGAGUUAUUUGUGAAAAUGGCCCCGACUCUUUGCCACUUCGCAUAA
((.((-((((.((.(((((((((.......)))))))))..)).)))))).))((((((.....))))))...((((((..((((...........)))).))))))... ( -37.50)
>consensus
GCAGCAAGUGUGGAAGUAUUAUGUGAGGUUCAUGGUGCUGCCCUGAUUGCUACGACUGCUCCGUGGAGUUAUUUGUGGGAAUGGCUCCGACUCUUUGGCACUUCGCAUAA
...((((((((((.(((((((((.......))))))))).))......................((((((((((....)))))))))).........)))))).)).... (-23.18 = -24.05 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:28 2006