Locus 8653

Sequence ID 3L_DroMel_CAF1
Location 22,457,331 – 22,457,422
Length 91
Max. P 0.943130
window14181

overview

Window 1

Location 22,457,331 – 22,457,422
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 84.35
Mean single sequence MFE -33.95
Consensus MFE -28.23
Energy contribution -29.07
Covariance contribution 0.84
Combinations/Pair 1.10
Mean z-score -2.86
Structure conservation index 0.83
SVM decision value 1.33
SVM RNA-class probability 0.943130
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22457331 91 + 23771897
CAAAGUGCAUUUAGUUGCAAGCAUUUAUUGUUUGCGGUCAAAUGUGCC-------------GUCCAUUGUCUUUGAGUCCUGUGGCCAGGACGAAGACCCCUUU
....(..(((((..(((((((((.....)))))))))..)))))..).-------------.......((((((..((((((....))))))))))))...... ( -33.50)
>DroPse_CAF1 22362 104 + 1
UAAAGUGCAUUUAGUUGCAUGCAUUUAUUGUUUGCGGUCAAAUGUGCCGGGCAGUACGGGCGUCCAUUGUCUUUUGGUCCUGCGGCCAGGACGAAGGCCUCAUU
....(..(((((..(((((.(((.....))).)))))..)))))..).((((.....(((((.....)))))(((.((((((....)))))).))))))).... ( -35.30)
>DroEre_CAF1 13190 91 + 1
CAAAGUGCAUUUAGUUGCAAGCAUUUAUUGUUUGCGGUCAAAUGCGCC-------------GUCCAUUGUCUUUGAGUCCUGCGGUCAGGACGAAGACCCCAUU
....((((((((..(((((((((.....)))))))))..)))))))).-------------.......((((((..((((((....))))))))))))...... ( -35.40)
>DroYak_CAF1 14276 91 + 1
CAAAGUGCAUUUAGUUGCAAGCAUUUAUUGUUUGCGGUCAAAUGUGCC-------------GUCCAUUGUCUUUGAGUCCUGCGGCCAGGACGAAGACCCCAUU
....(..(((((..(((((((((.....)))))))))..)))))..).-------------.......((((((..((((((....))))))))))))...... ( -33.20)
>DroAna_CAF1 7326 91 + 1
UAAAGUGCAUUUAGUUGCAAGCAUUUAUUGUUUGCGGUCAAAUGUGCC-------------GUCCGGUGUCUUUCGGAGUUGCGGCCUGGCCGUUGACCCCGUU
....(..(((((..(((((((((.....)))))))))..)))))..).-------------.(((((......)))))((((((((...)))).))))...... ( -31.70)
>DroPer_CAF1 22534 104 + 1
UAAAGUGCAUUUAGUUGCAUGCAUUUAUUGUUUGCGGUCAAAUGUGCCGGGCAGUAUGGGCGUCCAUUGUCUUUUGGUCCUGCGGCCAGAACGAAGGCCUCAUU
....(..(((((..(((((.(((.....))).)))))..)))))..).((((.....(((((.....)))))....))))((.((((........)))).)).. ( -34.60)
>consensus
CAAAGUGCAUUUAGUUGCAAGCAUUUAUUGUUUGCGGUCAAAUGUGCC_____________GUCCAUUGUCUUUGAGUCCUGCGGCCAGGACGAAGACCCCAUU
....((((((((..(((((((((.....)))))))))..)))))))).....................((((((..((((((....))))))))))))...... (-28.23 = -29.07 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:27 2006