Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,452,662 – 22,452,765 |
Length | 103 |
Max. P | 0.638580 |
Location | 22,452,662 – 22,452,765 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -43.96 |
Consensus MFE | -35.08 |
Energy contribution | -36.28 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.49 |
Structure conservation index | 0.80 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22452662 103 + 23771897 GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAAAUGCCGCGUUAUGCGCCACCAUGCAUUUGUGUUUUCGAUGGU-CUGCAGUUGGACCGGCGGUGUAGGCAGUCC- (((((....))..)))((((((((..(((.....))).....((((((.((((((....)))).......(((-((......))))))).))))))))))))))- ( -39.70) >DroSec_CAF1 4018 105 + 1 GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAUAUGCCGCGUUAUGCGCCGCCAUGCACUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGGCGGUGUAGGCAGUCCU (((((....))..)))((((((((..(((.....))).....(((((((((..(((....))).......(((((.......)))))))))))))))))))))). ( -48.30) >DroSim_CAF1 4022 105 + 1 GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAUAUGCCGCGUUAUGCGCCGCCAUGCACUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGGCGGUGUAGGCAGUCCU (((((....))..)))((((((((..(((.....))).....(((((((((..(((....))).......(((((.......)))))))))))))))))))))). ( -48.30) >DroEre_CAF1 8314 102 + 1 GCUGCAGAAGUUGGGCGGGUGGCUAUCGGAAAUGCCGUGUUAUGCGCCGCCUUGCAUUUGUGUUUUU--UGGUCCUGCAGUCGGACCGCCGAUGUAGGCAGUCC- (((((((......((((.(((((...(((.....))).))))).))))(((..(((....)))....--.))).))))))).((((.(((......))).))))- ( -41.60) >DroYak_CAF1 9525 104 + 1 UCUGCGGAAGCUAGGCGGGUGGCUAUCGGAAAUUCCGUGUUAUGCGCCGCCUUGCAUUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGCCGGUGUAGGCAGUCC- ...(((((.((.(((((((((((...(((.....))).)))))...)))))).)).)))))......(((.(.((((((.((((....))))))))))).))).- ( -41.90) >consensus GCUGCGGAAGUUGGGCGGGCUGCUAUCGGAAAUGCCGCGUUAUGCGCCGCCAUGCAUUUGUGUUUUCGAUGGUCCUGCAGCCGGACCGGCGGUGUAGGCAGUCC_ (((((....))..)))((((((((..(((.....))).....(((((((((..(((....))).......(((((.......)))))))))))))))))))))). (-35.08 = -36.28 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:26 2006