Locus 865

Sequence ID 3L_DroMel_CAF1
Location 2,606,851 – 2,606,941
Length 90
Max. P 0.601636
window1329

overview

Window 9

Location 2,606,851 – 2,606,941
Length 90
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 79.18
Mean single sequence MFE -35.30
Consensus MFE -20.19
Energy contribution -20.03
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -2.08
Structure conservation index 0.57
SVM decision value 0.14
SVM RNA-class probability 0.601636
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2606851 90 - 23771897
CAAAAUCGACUGGCGUCUCUCG---------------AUUCGUGAAUCGAGAUACGAGAUUCGAGAUUCCGGUGCUAAAGACUC-GAGGGUCGAGAUUACGGAUUC
.....((((.(..(((.(((((---------------(((....)))))))).)))..).))))((.((((...((...((((.-...)))).))....)))).)) ( -30.90)
>DroSec_CAF1 5198 98 - 1
CAAAAUCGAGUGGCGUCUCUCGGGUGGGGGAUUCCCGAUUCGA-------GAUUCGAGAUUCGAGAUUCCAG-GCUCAAGUCUCCAAGGGGUGAGAUUACGGAUUC
.....((((((..((..((((((((.(((....))).))))))-------))..))..))))))((.(((..-.((((...(((....))))))).....))).)) ( -35.90)
>DroSim_CAF1 7691 105 - 1
CAAAAUCGAGUGGCGUCUCUCGGGUGGGGGAUUCCCGAUUCGAGAAUCGAGAUUCGAGAUUCGAGAUUCCAG-GCUCAAGUCUCCGAGGGGCGAGAUUACGGAUUC
.....((((((..((((((((((.....(((.((.(((.((..((((....))))..)).))).)).)))((-((....))))))))))))))..))).))).... ( -39.10)
>consensus
CAAAAUCGAGUGGCGUCUCUCGGGUGGGGGAUUCCCGAUUCGAGAAUCGAGAUUCGAGAUUCGAGAUUCCAG_GCUCAAGUCUCCGAGGGGCGAGAUUACGGAUUC
...((((...(((.((((((((((.........)))))((((((........))))))....))))).)))........((((.....))))..))))........ (-20.19 = -20.03 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:04 2006