Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,451,589 – 22,451,679 |
Length | 90 |
Max. P | 0.737942 |
Location | 22,451,589 – 22,451,679 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 93.22 |
Mean single sequence MFE | -12.97 |
Consensus MFE | -12.07 |
Energy contribution | -12.31 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.19 |
Structure conservation index | 0.93 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22451589 90 + 23771897 A-AGAGCGGGCAAACAAGGUAAAUGGCUCGUAGUUAAAAUGCCGUUAAUAAAUCAUAAAACAAAACAGUUUCAGCAAUA-UAAACGAAAAGA .-...((((((..............))))))...........((((.(((.......((((......))))......))-).))))...... ( -9.96) >DroSec_CAF1 2929 91 + 1 A-AGCGCGGGCAAACAAGGUAAAUGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAACAAAACAGUUUCAGCAAUAAUAAAAGAAAAGA .-...((((((..............)))))).((((((((...(((.................))).))))))))................. ( -13.87) >DroSim_CAF1 2932 92 + 1 AAAGCGCGGGCAAACAAGGUAAAUGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAACAAAGCAGUUUCACCAAUAAUAAAAUAAAAGA ...((....))......(((.(((((((((....)))...))))))...........((((......)))).)))................. ( -11.10) >DroEre_CAF1 7242 91 + 1 G-AGCGCGGGCAAACAAAGUAAAAGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAAUAAAACAGUUUCAGCAAUAAUAAACGAAAAGA .-...((((((..............)))))).((((((((...(((.................))).))))))))................. ( -13.87) >DroYak_CAF1 8437 90 + 1 A-AGCGCGGGCAAACAAAGUAAAUGGCUCGUAGUUGAAAUGCCGUUUAUAAAUCA-AAAAUAAAACAGUUUCAGCAAUAAUAAACGAAAAGA .-...((((((..............)))))).((((((((....(((((......-...)))))...))))))))................. ( -16.04) >consensus A_AGCGCGGGCAAACAAGGUAAAUGGCUCGUAGUUGAAAUGCCGUUAAUAAAUCAUAAAACAAAACAGUUUCAGCAAUAAUAAACGAAAAGA .....((((((..............)))))).((((((((...(((.................))).))))))))................. (-12.07 = -12.31 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:20 2006