Locus 8648

Sequence ID 3L_DroMel_CAF1
Location 22,450,661 – 22,450,764
Length 103
Max. P 0.985021
window14173

overview

Window 3

Location 22,450,661 – 22,450,764
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 90.04
Mean single sequence MFE -23.40
Consensus MFE -18.98
Energy contribution -19.07
Covariance contribution 0.09
Combinations/Pair 1.09
Mean z-score -3.80
Structure conservation index 0.81
SVM decision value 1.99
SVM RNA-class probability 0.985021
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22450661 103 - 23771897
GAA-AAGAGUUUGAAAUUAUGGCACAAAGGAAAAUGUAAAUGCAUUUUUCCUUGCGCAAUUUAUUGCCGAAAUAAAUUAUCGUAAUAAUAUCAAAUAAAAAAC----U
...-....((((((.(((((.((.(((.(((((((((....))))))))).))).))((((((((.....))))))))......))))).)))))).......----. ( -23.70)
>DroPse_CAF1 15165 107 - 1
GAA-AAGAGUUUCAAAUUAUGGCACAAAGGAAAAUGUAAAUGCAUUUUUCUUUGCCAAAUUUAUUGCCCAAAUAAAUUAUCGUAAUAAUAUCAAAUAAAAAUGGGAAA
...-.....(..((.....(((((..(((((((((((....))))))))))))))))((((((((.....)))))))).......................))..).. ( -22.30)
>DroEre_CAF1 6310 101 - 1
GAA--AGAGUUUGAAAUUAUGGCACAAAGGAAAAUGUAAAUGCAUUUUUCCUUGCGCAAUUUAUUGCCGAAAUAAAUUAUCGUAAUAAUAUCAAAUAAA-AAC----U
...--...((((((.(((((.((.(((.(((((((((....))))))))).))).))((((((((.....))))))))......))))).))))))...-...----. ( -23.70)
>DroYak_CAF1 5660 103 - 1
GAA-AAGAGUUUGAAAUUAUGGAACAAAGGAAAAUGUAAAUGCAUUUUUCCUUGCGCAAUUUAUUGCCGAAAUAAAUUAUCGUAAUAAUAUCAAAUAAAAAAC----U
...-....((((((.(((((......(((((((((((....))).))))))))(((.((((((((.....))))))))..))).))))).)))))).......----. ( -20.70)
>DroAna_CAF1 1981 101 - 1
GAAAAAGGGUUUGAAAUUAUGGCAUAAAGGAAAAUGUAAAUGCAUUUUUCUUUGUGAAGUUUAUUGCCCAAAUAAAUUAUCGCAAUAAUAUCAAAUAAAAG-------
........((((((.(((((.((((((((((((((((....))))))))))))))((((((((((.....)))))))).)))).))))).)))))).....------- ( -27.70)
>DroPer_CAF1 15163 107 - 1
GAA-AAGAGUUUCAAAUUAUGGCACAAAGGAAAAUGUAAAUGCAUUUUUCUUUGCCAAAUUUAUUGCCCAAAUAAAUUAUCGUAAUAAUAUCAAAUAAAAAUGGGAAA
...-.....(..((.....(((((..(((((((((((....))))))))))))))))((((((((.....)))))))).......................))..).. ( -22.30)
>consensus
GAA_AAGAGUUUGAAAUUAUGGCACAAAGGAAAAUGUAAAUGCAUUUUUCCUUGCGAAAUUUAUUGCCCAAAUAAAUUAUCGUAAUAAUAUCAAAUAAAAAAC____U
........((((((.(((((.((.(((.(((((((((....))))))))).)))...((((((((.....))))))))...)).))))).))))))............ (-18.98 = -19.07 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:19 2006