Locus 8647

Sequence ID 3L_DroMel_CAF1
Location 22,449,719 – 22,449,823
Length 104
Max. P 0.558883
window14172

overview

Window 2

Location 22,449,719 – 22,449,823
Length 104
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 82.40
Mean single sequence MFE -18.64
Consensus MFE -11.16
Energy contribution -10.16
Covariance contribution -1.00
Combinations/Pair 1.26
Mean z-score -1.87
Structure conservation index 0.60
SVM decision value 0.05
SVM RNA-class probability 0.558883
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22449719 104 - 23771897
UUGCUCUA----ACAUAUACAUAUAUGUC--UAUCCAAACUCCUUUAGAUUUU-UUCUCACUGUGCAGGAAAAGAACGAAUCCAAGGGCUCUCCAUUUCUUUUGCACUUUA
.(((....----((((((....)))))).--..........(((((.(((((.-((((..((....))....)))).))))).)))))...............)))..... ( -15.70)
>DroSec_CAF1 1018 104 - 1
UCGCCCUA----ACAUAUUCAUAUAUGUC--UAUCCAAACUGCUUUCGAUUUU-UUCUCACUGUGCAGAAAAAGAACGAAUACAAGGGCUCUCCAUUUCUUUUGCACUUUA
..(((((.----((((((....)))))).--.........((..((((.((((-(((((.....).))))))))..))))..)))))))...................... ( -20.10)
>DroSim_CAF1 1016 105 - 1
UCGCCCUA----ACAUAUUCAUAUAUGUC--UAUCCAAACUGCUUUCGAUUUUUUUUUCACUGUGCAGAAAAAGAACGAAUCCAAGGGCUCUCCAUUUCUUUUGCACUUUA
..(((((.----((((((....)))))).--.........((..((((..(((((((((........)))))))))))))..)))))))...................... ( -21.20)
>DroEre_CAF1 5318 110 - 1
UCGCUCUAAUAAAUAUGUUUACAUAUAACUCUAUCCAAACUCUUUGGGAUUGU-UUCUCUCUGUGCAGGAAAAGAACGAAUCCAAGGGCUCUCCAUUUCUUUUGCACUUUA
..((........(((((....)))))..............((((((((.((((-(..(.(((.....))).)..))))).))))))))...............))...... ( -18.80)
>DroYak_CAF1 4730 96 - 1
------------AUAUAUAUAUAUAUAAC--UAUCCAAACACUUUUUUAUUGU-UUCUCUCUGUGUAGGAGAAGAAGGAAUCUAAGGGCUCCACAUUUCUUUUGCACUUUA
------------.(((((....)))))..--......................-........((((((((((((..(((..(....)..)))...)))))))))))).... ( -17.40)
>consensus
UCGCCCUA____ACAUAUUCAUAUAUGUC__UAUCCAAACUCCUUUCGAUUUU_UUCUCACUGUGCAGGAAAAGAACGAAUCCAAGGGCUCUCCAUUUCUUUUGCACUUUA
.............(((((....)))))...................................(((((((((((....((..(....)..))....))).)))))))).... (-11.16 = -10.16 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:18 2006