Locus 8645

Sequence ID 3L_DroMel_CAF1
Location 22,443,872 – 22,443,964
Length 92
Max. P 0.847416
window14167

overview

Window 7

Location 22,443,872 – 22,443,964
Length 92
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 66.14
Mean single sequence MFE -27.48
Consensus MFE -14.81
Energy contribution -15.00
Covariance contribution 0.19
Combinations/Pair 1.33
Mean z-score -1.56
Structure conservation index 0.54
SVM decision value 0.77
SVM RNA-class probability 0.847416
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22443872 92 + 23771897
ACUUUACGGAUUUCGUUUAAAUCGUUCUUUAUUCUCUCGC-----------------------CCGUGGUGUAAUUGUAGGUUAAUACUUCGGGGCGGCAAUUUCUUUGCAAGA-----A
........(((((.....))))).(((((........(((-----------------------((..((((((((.....))).)))))...)))))((((.....))))))))-----) ( -19.30)
>DroEre_CAF1 135 93 + 1
CCCUUACGGAUUUCGUUUAAAUCGUUCUUUAUUCUCUCGC----------------------CCCGCGGUGUUAUUGUAAGUUAAUACUGCGGGAGGGCGAUCUCUCUGGGAAA-----A
(((.....(((((.....))))).........((.(((..----------------------((((((((((((........)))))))))))).))).)).......)))...-----. ( -29.60)
>DroYak_CAF1 302 92 + 1
ACUUUACGGAUUUCGUUUAAAUCGUUCUUUAUUCUCUCAC-----------------------CCGCAGCGUUAUUGUAAGUUAAUGCUGCGGGACUGCAAUUUUCUUGGGAAA-----A
........(((((.....)))))...........((((((-----------------------(((((((((((........)))))))))))).............)))))..-----. ( -24.71)
>DroPer_CAF1 8524 120 + 1
ACUUUGUGGAUUUCAUUUAAACCACUUUUCAUACUCCCCAGCCAGCAGCCAGGACCCAGCACCCAGCGGUCGUAUUGCAAGUUAAUGCUGCGGGGAUCCAAAAUCGUUGGGGAGCUGGCA
.....((((.((......)).))))...............((((((.((..(....).)).(((((((((......(((.((....)))))((....))...)))))))))..)))))). ( -36.30)
>consensus
ACUUUACGGAUUUCGUUUAAAUCGUUCUUUAUUCUCUCGC_______________________CCGCGGUGUUAUUGUAAGUUAAUACUGCGGGACGGCAAUUUCUUUGGGAAA_____A
.....((((.((......)).)))).....................................((((((((((((........)))))))))))).......................... (-14.81 = -15.00 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:14 2006