Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,440,458 – 22,440,560 |
Length | 102 |
Max. P | 0.711762 |
Location | 22,440,458 – 22,440,560 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.88 |
Mean single sequence MFE | -14.38 |
Consensus MFE | -9.53 |
Energy contribution | -9.98 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.06 |
Mean z-score | -2.35 |
Structure conservation index | 0.66 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22440458 102 - 23771897 UCACUAAUGGAAUUGUUUCCCGCUCCACUUAUCCUCGUCAACUUCAGGGUUUCUACUGCAGGUCGUCAUAUUUCCGUAUUUCGAUUCAUUACUAAUUCUCUU ......((((((.((...((.((.......(((((.(......).))))).......)).))....))...))))))......................... ( -14.44) >DroSec_CAF1 12179 87 - 1 UCACUAAUCGAAUUAUUUCCUGCUCCACUUAUCCUCGUCA---------------UCGCAGGACGUCAUAUUUCUGUAUUUCGAUUCAUUACUAAUUCUCUU .........((((((..((((((...((........))..---------------..))))))((..((((....))))..)).........)))))).... ( -13.70) >DroSim_CAF1 16706 87 - 1 UCACUAAUGGAAUUAUUUCCUGCUCCACUUAUCCUCGUCA---------------UUGCAGGACGUCAUAUUUCUGUAUUUCGAUUCAUUACUAAUUCUCUU ....(((((((......((((((...((........))..---------------..))))))((..((((....))))..)).)))))))........... ( -15.00) >consensus UCACUAAUGGAAUUAUUUCCUGCUCCACUUAUCCUCGUCA_______________UUGCAGGACGUCAUAUUUCUGUAUUUCGAUUCAUUACUAAUUCUCUU .........((((((..((((((..................................))))))((..((((....))))..)).........)))))).... ( -9.53 = -9.98 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:08 2006