Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,606,455 – 2,606,551 |
Length | 96 |
Max. P | 0.904653 |
Location | 2,606,455 – 2,606,551 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.13 |
Mean single sequence MFE | -24.76 |
Consensus MFE | -7.81 |
Energy contribution | -7.21 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.22 |
Mean z-score | -2.16 |
Structure conservation index | 0.32 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2606455 96 - 23771897 CAAGAUA------------------GCAAGAGCUGUGUGGAAAAUACAGCAGUAG----CAGCAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG ((..(((------------------((....(((((((.....))))))).((.(----(((((((.........))))).........))).))..............)))))..)) ( -24.30) >DroPse_CAF1 10220 112 - 1 CAAGAUACUGGCGGGAUAGUAGGUGGCAGGAGGUGGCAGGAGAUAACAU------GCAACACCACCAACAUCAUCGCUACACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUUUG (((((((((.((...((((...((((((((.((((((((.......).)------))..)))).)).........(.....).......))))))...))))..))..)).))))))) ( -26.50) >DroEre_CAF1 4849 90 - 1 CAAGAUA------------------GCAAGAGCUGUGUGGAAAAUACAGCAG----------CAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG ((..(((------------------((....(((((((.....))))))).(----------((((.........))))).............................)))))..)) ( -23.00) >DroYak_CAF1 7959 93 - 1 CAAGAUA------------------GCAAGAGCUGUGUGGAAAAUACAGCAG-------CAGCAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG ((..(((------------------((....(((((((.....))))))).(-------(.(((((.........))))).((......)).............))...)))))..)) ( -23.50) >DroPer_CAF1 12127 112 - 1 CAAGAUACUGGCGGGAUAGUAGGUGGCAGGAGGUGGCAGGAGAUAACAU------GCAACACCACCAACAUCAUCGCUACACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUUUG (((((((((.((...((((...((((((((.((((((((.......).)------))..)))).)).........(.....).......))))))...))))..))..)).))))))) ( -26.50) >consensus CAAGAUA__________________GCAAGAGCUGUGUGGAAAAUACAGCAG_______CACCAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG .........................((....(((((.........................))))).........((.............))............))............ ( -7.81 = -7.21 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:03 2006