Locus 864

Sequence ID 3L_DroMel_CAF1
Location 2,606,455 – 2,606,551
Length 96
Max. P 0.904653
window1328

overview

Window 8

Location 2,606,455 – 2,606,551
Length 96
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 77.13
Mean single sequence MFE -24.76
Consensus MFE -7.81
Energy contribution -7.21
Covariance contribution -0.60
Combinations/Pair 1.22
Mean z-score -2.16
Structure conservation index 0.32
SVM decision value 1.04
SVM RNA-class probability 0.904653
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2606455 96 - 23771897
CAAGAUA------------------GCAAGAGCUGUGUGGAAAAUACAGCAGUAG----CAGCAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG
((..(((------------------((....(((((((.....))))))).((.(----(((((((.........))))).........))).))..............)))))..)) ( -24.30)
>DroPse_CAF1 10220 112 - 1
CAAGAUACUGGCGGGAUAGUAGGUGGCAGGAGGUGGCAGGAGAUAACAU------GCAACACCACCAACAUCAUCGCUACACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUUUG
(((((((((.((...((((...((((((((.((((((((.......).)------))..)))).)).........(.....).......))))))...))))..))..)).))))))) ( -26.50)
>DroEre_CAF1 4849 90 - 1
CAAGAUA------------------GCAAGAGCUGUGUGGAAAAUACAGCAG----------CAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG
((..(((------------------((....(((((((.....))))))).(----------((((.........))))).............................)))))..)) ( -23.00)
>DroYak_CAF1 7959 93 - 1
CAAGAUA------------------GCAAGAGCUGUGUGGAAAAUACAGCAG-------CAGCAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG
((..(((------------------((....(((((((.....))))))).(-------(.(((((.........))))).((......)).............))...)))))..)) ( -23.50)
>DroPer_CAF1 12127 112 - 1
CAAGAUACUGGCGGGAUAGUAGGUGGCAGGAGGUGGCAGGAGAUAACAU------GCAACACCACCAACAUCAUCGCUACACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUUUG
(((((((((.((...((((...((((((((.((((((((.......).)------))..)))).)).........(.....).......))))))...))))..))..)).))))))) ( -26.50)
>consensus
CAAGAUA__________________GCAAGAGCUGUGUGGAAAAUACAGCAG_______CACCAGCAACAUCAUCGCUGCACAAACACAUGCCACAAUUUAUAAGCAAAGUUAUUCUG
.........................((....(((((.........................))))).........((.............))............))............ ( -7.81 =  -7.21 +  -0.60) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:03 2006